Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060980.seq
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82275-1|CAB05237.2|  472|Caenorhabditis elegans Hypothetical pr...    35   0.047
Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical pr...    35   0.047
U47144-1|AAB52616.2|  448|Caenorhabditis elegans Hypothetical pr...    31   0.77 
AF078790-10|AAC26931.1|  197|Caenorhabditis elegans Hypothetical...    29   3.1  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z83219-5|CAM35834.1|  390|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    28   7.1  
AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical ...    27   9.4  
AC006621-3|AAK68263.1|  368|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z82275-1|CAB05237.2|  472|Caenorhabditis elegans Hypothetical
           protein K01G12.3 protein.
          Length = 472

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = +1

Query: 304 KLITEQLDLIIEKGFYAPRNNVQNNPKQIENKQETDRDNREGXNVGSKIEPEASSASHQK 483
           ++IT  LD +I + +Y   N   +N   + N QE+DR+N  G   G K E   +  S +K
Sbjct: 348 QVITTLLDQVIRQNYYLNLNIPADN-LPLRNPQESDRNNVNGNADGGKNEKHGAEDSSKK 406

Query: 484 VPDKPE 501
              + E
Sbjct: 407 DEQRDE 412


>Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical
           protein K07C5.3 protein.
          Length = 493

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 161 KVCDYGEKCYRMNPVHFREFSHP 229
           + C YGEKCYR N  H   F HP
Sbjct: 469 EACRYGEKCYRKNKDHLDSFWHP 491


>U47144-1|AAB52616.2|  448|Caenorhabditis elegans Hypothetical
           protein ZC53.1 protein.
          Length = 448

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +1

Query: 331 IIEKGFYAPRNNVQNNPKQIENKQETDRDNREGXNVGSKIEPEASSASHQKVPDKPE 501
           I+ +GF  P  +  +NP    + Q T R    G ++G     +  S++ +   ++PE
Sbjct: 12  ILNRGFREPHPSEVSNPTMRSSSQTTTRGTGSGISIGGNTAFDQGSSTGRTTSNQPE 68


>AF078790-10|AAC26931.1|  197|Caenorhabditis elegans Hypothetical
           protein F36H12.5 protein.
          Length = 197

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 379 PKQIENKQETDRD-NREGXNVGSKI-EPEASSASHQKVPDKPENXKQCFQIMKPKLRRLS 552
           P + E K ET  +  +E   + S++ EP+A     +   +K E  +  F  +KPK +   
Sbjct: 57  PPEAEKKPETGEEPKKEKSKMKSEVKEPDAPKKDDKTSDEKKEKQEDTFDAVKPKQQDAD 116

Query: 553 IEGEL 567
            + EL
Sbjct: 117 RKKEL 121


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 418  CPCLFLVCSQFVLGCFVHCSEEHRIP 341
            CP L+  CS    GC + C++ HR P
Sbjct: 1114 CPSLYKCCSD---GCVMRCTQPHRAP 1136


>Z83219-5|CAM35834.1|  390|Caenorhabditis elegans Hypothetical
           protein C31C9.8 protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -3

Query: 583 LDFSLTTPPLSISVLILASLFENIVLX--FQ-VCPVLFDDLRNLPPVQFWTQHF 431
           +  +L   P++I   IL    +N+ +   F+  C VL DDL   P  +FW   F
Sbjct: 1   MSVTLEENPIAIRTCILYEFRKNLPIFESFKNFCHVLGDDLIGFPEFEFWFYRF 54


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +1

Query: 256 ASGGDYPIPDKYNLQKKLITEQLDLIIEKGFYAPRNNVQNNPKQIENKQETD 411
           A+    P P K    ++ +T   +L++E+  Y   N  + NPK+ ++ +  D
Sbjct: 612 ATSSATPKPSKRTTTRRPMTASKELVVEEIIYEDENGNRMNPKKRKSGKADD 663


>AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical
           protein Y40D12A.2 protein.
          Length = 512

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 292 NLQKKLITEQLDLIIEKGFYAPRNNVQNNP 381
           NL KK+I E   ++  K FY P N++Q  P
Sbjct: 298 NLYKKIIGES-PVLKNKYFYPPSNDIQGQP 326


>AC006621-3|AAK68263.1|  368|Caenorhabditis elegans Hypothetical
           protein C52A10.3 protein.
          Length = 368

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 268 DYPIPDKYNLQKKLITEQLDLII 336
           DYP+  KY  QK LI E L+ +I
Sbjct: 86  DYPVGKKYEFQKFLIFESLNDVI 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,472,431
Number of Sequences: 27780
Number of extensions: 326429
Number of successful extensions: 930
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)