Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060980.seq
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36420.1 68415.m04471 expressed protein                             33   0.18 
At1g02670.1 68414.m00217 DNA repair protein, putative similar to...    31   0.54 
At3g42910.1 68416.m04500 expressed protein ; expression supporte...    29   3.8  
At3g16630.2 68416.m02126 kinesin motor family protein similar to...    28   5.0  
At3g16630.1 68416.m02125 kinesin motor family protein similar to...    28   5.0  
At1g19870.1 68414.m02492 calmodulin-binding family protein conta...    28   5.0  
At3g48840.1 68416.m05334 RNA recognition motif (RRM)-containing ...    28   6.6  
At3g12860.1 68416.m01603 nucleolar protein Nop56, putative simil...    28   6.6  
At4g37900.1 68417.m05360 glycine-rich protein                          27   8.8  

>At2g36420.1 68415.m04471 expressed protein 
          Length = 439

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 391 ENKQETDRDNREGXNVGSKIEPEASSASH-QKVPDKPENXKQCFQIMKPKLRRL 549
           E+K+E D++     +V   +E E     H Q  PD P N    F+I++   RRL
Sbjct: 240 EDKEEEDKEQCSPVSVLDPLEEEEEDEDHHQHEPDPPNNLSCSFEIVQRAKRRL 293


>At1g02670.1 68414.m00217 DNA repair protein, putative similar to
           SP|P79051 DNA repair protein rhp16 (RAD16 homolog)
           {Schizosaccharomyces pombe}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 678

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 17/62 (27%), Positives = 35/62 (56%)
 Frame = +1

Query: 358 RNNVQNNPKQIENKQETDRDNREGXNVGSKIEPEASSASHQKVPDKPENXKQCFQIMKPK 537
           +N +  +  Q EN +E +  + +  +VG +++ E ++  +   P  P N K+ +QIMK K
Sbjct: 46  KNAILPSSSQDENLKEEEVPD-DDDSVGGEVQGEVNANDYIPNPAAPANTKRKWQIMKEK 104

Query: 538 LR 543
           ++
Sbjct: 105 VQ 106


>At3g42910.1 68416.m04500 expressed protein ; expression supported
           by MPSS
          Length = 649

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 338 KRDSMLLGTMYKTTQNKLRTNKKQTG--TTEKGKMLGPKLNRRQVPQVIKKYRTNLKXQN 511
           KR+++  G   +    K R  K  TG  + E GK  GP  N ++VP VI+K +     +N
Sbjct: 133 KRNAISKGGRGRKASKKGRLPKNLTGLVSDENGKD-GPANNGKEVPAVIRKEKHVPAPRN 191

Query: 512 N 514
           N
Sbjct: 192 N 192


>At3g16630.2 68416.m02126 kinesin motor family protein similar to
           mitotic centromere-associated kinesin GB:AAC27660 from
           [Homo sapiens]; contains Pfam profile PF00225: Kinesin
           motor domain
          Length = 794

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/82 (20%), Positives = 33/82 (40%)
 Frame = +1

Query: 259 SGGDYPIPDKYNLQKKLITEQLDLIIEKGFYAPRNNVQNNPKQIENKQETDRDNREGXNV 438
           SG D+  P  Y  +  + +  +D    KG   P ++   +  Q  N     ++  +    
Sbjct: 584 SGIDFRQPTNYREESGIPSFSMD----KGRSEPNSSFAGSTSQRNNISSYPQETSDREEK 639

Query: 439 GSKIEPEASSASHQKVPDKPEN 504
             K+ P       ++ PD+P+N
Sbjct: 640 VKKVSPPRGKGLREEKPDRPQN 661


>At3g16630.1 68416.m02125 kinesin motor family protein similar to
           mitotic centromere-associated kinesin GB:AAC27660 from
           [Homo sapiens]; contains Pfam profile PF00225: Kinesin
           motor domain
          Length = 794

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/82 (20%), Positives = 33/82 (40%)
 Frame = +1

Query: 259 SGGDYPIPDKYNLQKKLITEQLDLIIEKGFYAPRNNVQNNPKQIENKQETDRDNREGXNV 438
           SG D+  P  Y  +  + +  +D    KG   P ++   +  Q  N     ++  +    
Sbjct: 584 SGIDFRQPTNYREESGIPSFSMD----KGRSEPNSSFAGSTSQRNNISSYPQETSDREEK 639

Query: 439 GSKIEPEASSASHQKVPDKPEN 504
             K+ P       ++ PD+P+N
Sbjct: 640 VKKVSPPRGKGLREEKPDRPQN 661


>At1g19870.1 68414.m02492 calmodulin-binding family protein contains
           Pfam profile: PF00612 IQ calmodulin-binding motif
          Length = 794

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +1

Query: 274 PIPDKYNLQKKLITEQLDLIIEKGF-YAPRNNVQNNPKQIENKQETDRDNREGXNVGSKI 450
           P P+K + +  L TE+ +L   +    +P+ +  N+   +ENK ETD  + E   V  + 
Sbjct: 343 PKPEKTS-KANLTTEEQNLEETQNVKISPQADFVNSDSTVENKTETDMPSYEASKVEGQ- 400

Query: 451 EPEASSASHQKVPDKPE 501
             E S        D PE
Sbjct: 401 NVELSETEKMSQYDSPE 417


>At3g48840.1 68416.m05334 RNA recognition motif (RRM)-containing
           protein 
          Length = 144

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
 Frame = +1

Query: 271 YPIPDKYNLQKKLITEQLDLIIEKGFYAPRNNVQN--NPKQIENKQ----ETDRDNRE 426
           YP+  KYNL +KL  E  D + E+      ++++N    K+I+ KQ    ET+  N+E
Sbjct: 76  YPLRPKYNLAEKLWYE--DYLREESLLIEADDLENKQKKKKIKEKQINVTETNLHNKE 131


>At3g12860.1 68416.m01603 nucleolar protein Nop56, putative similar
           to XNop56 protein [Xenopus laevis] GI:14799394; contains
           Pfam profile PF01798: Putative snoRNA binding domain
          Length = 499

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 25/90 (27%), Positives = 42/90 (46%)
 Frame = +1

Query: 301 KKLITEQLDLIIEKGFYAPRNNVQNNPKQIENKQETDRDNREGXNVGSKIEPEASSASHQ 480
           ++ + E+LD   +KG  APR NV    + +EN ++ D    EG       E +    + +
Sbjct: 401 REQVEERLDFY-DKGV-APRKNVDVMKEVLENLEKKD----EGEKTVDASEKKKKRKTEE 454

Query: 481 KVPDKPENXKQCFQIMKPKLRRLSIEGELL 570
           K  +K E   +     K K +  ++EGE L
Sbjct: 455 KEEEKEEEKSK-----KKKKKSKAVEGEEL 479


>At4g37900.1 68417.m05360 glycine-rich protein 
          Length = 787

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 167 CDYGEKCYRMNPVHFREFSHPHLESILDNLPVV 265
           C++   C+R+NPV ++         +LDN  VV
Sbjct: 84  CEWVWHCHRLNPVRYKTDCEQFYGRVLDNSGVV 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,410,348
Number of Sequences: 28952
Number of extensions: 293464
Number of successful extensions: 757
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)