Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060979.seq
         (678 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    27   0.11 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   5.3  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   7.0  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   7.0  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   7.0  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   9.3  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 15/63 (23%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
 Frame = +1

Query: 331 EMAENVEDITKNISELTVLSFRKLDDVKKLAKH-FTKIINHPITEQSPSIQRYLKNLQET 507
           E+++++E + +N+++     + ++++V++   H   K+I   IT++S S +RY+  +   
Sbjct: 743 ELSKSLEGLLENVAQ-----YLQIENVEQTLNHEIKKVIPGRITQKSCSTKRYVTPVNTL 797

Query: 508 PRG 516
            RG
Sbjct: 798 VRG 800


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 306 KIKLICCEFCDFLGSAKI 253
           KIK   C+ CDF+   K+
Sbjct: 198 KIKTFKCKQCDFVAITKL 215


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 190 KLQNVQNNFE 161
           K+ N+QNNFE
Sbjct: 57  KIYNIQNNFE 66


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 189 LYGHSTSDSSTLKHNTSGGA 248
           LYG+S S  S+++   SGGA
Sbjct: 218 LYGNSMSVDSSVQSWLSGGA 237


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 338 PRTLRTSQRTYLS*PCYRFGSLMTSKS 418
           P +L T QRT  S P Y   S+MTS S
Sbjct: 81  PSSLPT-QRTSTSNPTYSSRSVMTSCS 106


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 159 ISKLFWTFWSL 191
           IS L W FWSL
Sbjct: 565 ISTLGWFFWSL 575


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,778
Number of Sequences: 336
Number of extensions: 3000
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)