Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060979.seq
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     29   0.47 
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.3  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   7.6  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    25   7.6  
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe...    25   7.6  

>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 200 LNIRQFHPQTQHKRRGRLILALPRKSQNSQQISFILTATINFALKWPRTLRTS 358
           L+IR  HP    K   R++     K  N +  +F   +T++  LK+P  +RTS
Sbjct: 9   LSIRMSHPYYSEKEISRILSTRDPKENNLRMQAFAWISTLSKTLKFP--VRTS 59


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 138 FLGVYLIISKLFWTFWSLYGH 200
           F+G +L+   +FW  W+ Y H
Sbjct: 420 FIGCFLLPISMFWFAWTCYPH 440


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 412 KKLAKHFTKIINHPITEQSPSIQRYLKN 495
           K L ++ T+   HP+  QSP    +L+N
Sbjct: 107 KLLNRYITRCALHPVLHQSPHFIAFLEN 134


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 352 DITKNISELTVLSFRKLDDVKKLAKHFTKIINHPITEQSPSIQ 480
           +++ + S   VLS R  D +     H  ++ N  IT Q P  Q
Sbjct: 193 EMSNHCSPKIVLSLRPQDKIPDFITHVLELKNKKITYQGPKEQ 235


>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 199 TQHQTVPPSNTTQAEGQTDLGTT 267
           TQ QT P    T   GQ+++GTT
Sbjct: 138 TQSQTQPAQANTSLFGQSNIGTT 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,082
Number of Sequences: 5004
Number of extensions: 48621
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)