Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060979.seq
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0019 + 9457336-9457839                                           28   6.0  
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157...    28   6.0  
07_01_0184 - 1304328-1304951,1305328-1305441,1305549-1305839,130...    28   7.9  
03_06_0109 - 31717691-31718311,31719110-31719223,31719316-317196...    28   7.9  

>04_03_0019 + 9457336-9457839
          Length = 167

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +2

Query: 470 QAFNVT*RTYRKRQEDNFPKTR---QSKLSTFXRLRRKVACNGQRFNSLPVSEVSRIAEK 640
           +AFN+     RK  + +FP  +    S+LST   L+ K +C G+  N+   + V  +  +
Sbjct: 34  KAFNMNGLYTRKGYQVHFPSDQTACHSELSTNGNLKLKTSCAGRTGNAQVTTMVMNVGFE 93

Query: 641 RFI 649
           R +
Sbjct: 94  RHV 96


>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
            28316548-28316615,28316693-28316757,28316922-28320162,
            28320239-28320301,28320756-28320824,28321020-28321055,
            28322035-28322280,28322531-28322569,28322695-28322816,
            28322921-28323004,28323100-28323235,28323486-28323535,
            28323620-28323756,28323863-28323951,28324847-28324954,
            28325080-28325163,28325841-28325888,28326036-28326153,
            28328262-28328347
          Length = 2168

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 95   PYCFFLFTESLTNLIFGSLLNYFKIILDILE 187
            P C   F+ SL NL+  S ++ FK +LD +E
Sbjct: 1106 PLCHMEFSSSLANLVLSS-VDRFKTMLDFIE 1135


>07_01_0184 -
           1304328-1304951,1305328-1305441,1305549-1305839,
           1305930-1306238,1306326-1307048
          Length = 686

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 57  RCNYIFIFFFLKNLIVFFYS 116
           + N IF+FF L+ LI+ FYS
Sbjct: 485 KANLIFLFFLLRKLILPFYS 504


>03_06_0109 -
           31717691-31718311,31719110-31719223,31719316-31719606,
           31719698-31720006,31720098-31720865
          Length = 700

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 57  RCNYIFIFFFLKNLIVFFYS 116
           + N IF+FF L+ LI+ FYS
Sbjct: 500 KANLIFLFFLLRKLILPFYS 519


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,995,994
Number of Sequences: 37544
Number of extensions: 267455
Number of successful extensions: 626
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)