Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060979.seq
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22686| Best HMM Match : zf-C3HC4 (HMM E-Value=0.1)                  31   0.86 
SB_35921| Best HMM Match : Myelin_PLP (HMM E-Value=8.5)                29   2.6  
SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)            28   8.0  

>SB_22686| Best HMM Match : zf-C3HC4 (HMM E-Value=0.1)
          Length = 265

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -1

Query: 594 LCPLQATFLLSRKNVLNFDCRVFGKLSSWRFL*VL---*VTLNAWTLFCYRMIDDL 436
           +C     +L + K V  F  R  GK+  WRF+  L    V LNA+  F  R +D +
Sbjct: 116 ICQTFMRYLYAFKRVCRFVSRQVGKICHWRFVSTLCGGYVPLNAFVGFVSRQVDKI 171


>SB_35921| Best HMM Match : Myelin_PLP (HMM E-Value=8.5)
          Length = 201

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -1

Query: 573 FLLSRKNVLNFDCRVFGKLSSWRFL*VL---*VTLNAWTLFCYRMIDDL 436
           +L + K V  F  R  GK+  WRF+  L    V LNA+  F  R +D +
Sbjct: 120 YLYAFKRVCRFVSRQVGKICHWRFVSTLCGGYVPLNAFVGFVSRQVDKI 168


>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +2

Query: 92  KPYCFFLFTESLTNLIFGSLLNYFKIIL----DILEFVRALNIRQFHPQTQHKRRGR 250
           K Y  F +   +T+    ++LN   I+L    +   FVR LN+  F   T+H+R+ +
Sbjct: 304 KAYHPFRWVRYITHSFTSTILNSQSIVLFKTNNFASFVRQLNLYGFRKVTEHRRKNQ 360


>SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)
          Length = 1850

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 580 GYFSSQSXKCTQLRLSRFWKIILLAFPVSSLGNVECLD 467
           G F  +S    +LRL  + +++ L F   +LGN+  LD
Sbjct: 277 GLFDKESLSMQELRLGVYSRVLALLFVDRTLGNLTPLD 314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,903,494
Number of Sequences: 59808
Number of extensions: 328328
Number of successful extensions: 967
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)