Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060979.seq
         (678 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y11354-1|CAA72189.1| 1083|Homo sapiens subunit of RNA polymerase...    30   8.7  
U75308-1|AAC50901.1|  947|Homo sapiens TBP-associated factor pro...    30   8.7  
AY623115-1|AAT38111.1| 1085|Homo sapiens TAF4 RNA polymerase II,...    30   8.7  
AL137077-3|CAI11046.1|  949|Homo sapiens TAF4 RNA polymerase II,...    30   8.7  
AL137077-2|CAI11045.1| 1085|Homo sapiens TAF4 RNA polymerase II,...    30   8.7  
AL109911-3|CAI19183.1|  949|Homo sapiens TAF4 RNA polymerase II,...    30   8.7  
AL109911-2|CAI19182.1| 1085|Homo sapiens TAF4 RNA polymerase II,...    30   8.7  

>Y11354-1|CAA72189.1| 1083|Homo sapiens subunit of RNA polymerase II
           transcription factor protein.
          Length = 1083

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 187 VCTGTQHQTVPPSNTTQAEGQTDLGTTKKVAEFTAD*FYFDCNY*FRVEMAENVEDITKN 366
           V TGT  +TVP + TT +     +   KK   F +       +     E A NV+++ +N
Sbjct: 565 VQTGTPQRTVPGATTTSSAATETMENVKKCKNFLSTLIKLASSGKQSTETAANVKELVQN 624

Query: 367 I 369
           +
Sbjct: 625 L 625


>U75308-1|AAC50901.1|  947|Homo sapiens TBP-associated factor
           protein.
          Length = 947

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 187 VCTGTQHQTVPPSNTTQAEGQTDLGTTKKVAEFTAD*FYFDCNY*FRVEMAENVEDITKN 366
           V TGT  +TVP + TT +     +   KK   F +       +     E A NV+++ +N
Sbjct: 429 VQTGTPQRTVPGATTTSSAATETMENVKKCKNFLSTLIKLASSGKQSTETAANVKELVQN 488

Query: 367 I 369
           +
Sbjct: 489 L 489


>AY623115-1|AAT38111.1| 1085|Homo sapiens TAF4 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 135kD
           protein.
          Length = 1085

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 187 VCTGTQHQTVPPSNTTQAEGQTDLGTTKKVAEFTAD*FYFDCNY*FRVEMAENVEDITKN 366
           V TGT  +TVP + TT +     +   KK   F +       +     E A NV+++ +N
Sbjct: 567 VQTGTPQRTVPGATTTSSAATETMENVKKCKNFLSTLIKLASSGKQSTETAANVKELVQN 626

Query: 367 I 369
           +
Sbjct: 627 L 627


>AL137077-3|CAI11046.1|  949|Homo sapiens TAF4 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 135kD
           protein.
          Length = 949

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 187 VCTGTQHQTVPPSNTTQAEGQTDLGTTKKVAEFTAD*FYFDCNY*FRVEMAENVEDITKN 366
           V TGT  +TVP + TT +     +   KK   F +       +     E A NV+++ +N
Sbjct: 431 VQTGTPQRTVPGATTTSSAATETMENVKKCKNFLSTLIKLASSGKQSTETAANVKELVQN 490

Query: 367 I 369
           +
Sbjct: 491 L 491


>AL137077-2|CAI11045.1| 1085|Homo sapiens TAF4 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 135kD
           protein.
          Length = 1085

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 187 VCTGTQHQTVPPSNTTQAEGQTDLGTTKKVAEFTAD*FYFDCNY*FRVEMAENVEDITKN 366
           V TGT  +TVP + TT +     +   KK   F +       +     E A NV+++ +N
Sbjct: 567 VQTGTPQRTVPGATTTSSAATETMENVKKCKNFLSTLIKLASSGKQSTETAANVKELVQN 626

Query: 367 I 369
           +
Sbjct: 627 L 627


>AL109911-3|CAI19183.1|  949|Homo sapiens TAF4 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 135kD
           protein.
          Length = 949

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 187 VCTGTQHQTVPPSNTTQAEGQTDLGTTKKVAEFTAD*FYFDCNY*FRVEMAENVEDITKN 366
           V TGT  +TVP + TT +     +   KK   F +       +     E A NV+++ +N
Sbjct: 431 VQTGTPQRTVPGATTTSSAATETMENVKKCKNFLSTLIKLASSGKQSTETAANVKELVQN 490

Query: 367 I 369
           +
Sbjct: 491 L 491


>AL109911-2|CAI19182.1| 1085|Homo sapiens TAF4 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 135kD
           protein.
          Length = 1085

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 187 VCTGTQHQTVPPSNTTQAEGQTDLGTTKKVAEFTAD*FYFDCNY*FRVEMAENVEDITKN 366
           V TGT  +TVP + TT +     +   KK   F +       +     E A NV+++ +N
Sbjct: 567 VQTGTPQRTVPGATTTSSAATETMENVKKCKNFLSTLIKLASSGKQSTETAANVKELVQN 626

Query: 367 I 369
           +
Sbjct: 627 L 627


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,423,123
Number of Sequences: 237096
Number of extensions: 1485863
Number of successful extensions: 3278
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3278
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)