Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060979.seq
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z68493-7|CAA92793.1|  339|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U00055-3|AAA50723.3|  693|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z93380-3|CAB07600.1|  339|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z82266-12|CAB05185.2| 1080|Caenorhabditis elegans Hypothetical p...    27   9.3  

>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical
           protein C50C3.2 protein.
          Length = 2107

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +1

Query: 346 VEDITKNISELTVLSFRKLDDVKKLAKHFTKIINHPITEQSPSIQRYLKNLQETP 510
           +E I  ++    V   +K+DD KKL  H T+ +N  +  Q+  I+  +K+L   P
Sbjct: 661 LEGIQNSVENFEVKIHQKVDDTKKLL-HITENMNE-LNSQNEWIRAKIKSLSAEP 713


>Z68493-7|CAA92793.1|  339|Caenorhabditis elegans Hypothetical
           protein C33A12.10 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 446 LMILVKCFASFLTSSSFRNDSTVSSDMFFVMSS 348
           L   V  +A +LT  SFRN+ +V+S+  F  SS
Sbjct: 299 LQFCVVTWAFYLTHPSFRNNQSVNSNKIFSTSS 331


>U00055-3|AAA50723.3|  693|Caenorhabditis elegans Hypothetical
           protein R02F2.7 protein.
          Length = 693

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = +1

Query: 286 TAD*FYFDCNY*FRVEMAENVEDITKNISELTVLSFRKLDDVKKLAKHFTKIINHPITEQ 465
           TA+     C Y   + +  +  D+  N SEL  +   K   +K++ KH   IIN     +
Sbjct: 282 TAEVCMSPCIYYAMISVLRSTFDL--NDSELIFIENLKTLKLKEITKHLPSIINSCSNTR 339

Query: 466 SPSIQRYLKNLQ 501
             +  + LKNL+
Sbjct: 340 QITASKKLKNLE 351


>Z93380-3|CAB07600.1|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.4 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 47  TDLEMQLYFYFFLS*KPYCFFLFTESLTNLIFGSLLNYF 163
           TD E++LYFY+  +      +  T S+ +L F  L++YF
Sbjct: 107 TDCEVELYFYYLTN------YFSTYSVFSLTFDRLISYF 139


>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical protein
            ZK287.4 protein.
          Length = 1208

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 287  VNSATFLVVPRSVCPSA--CVVFEGGTV*C*VPVQTPKCP 174
            V S+ F  VPR++CP     +  +G  + C  P +  KCP
Sbjct: 1058 VTSSPFTFVPRNMCPQGDPLITVDGTPIQC-DPSKAAKCP 1096


>Z82266-12|CAB05185.2| 1080|Caenorhabditis elegans Hypothetical
           protein F23B2.11 protein.
          Length = 1080

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +2

Query: 149 LLNYFKIILDILEFVRALNIR 211
           LLN  +++ D+ EF++A+NIR
Sbjct: 667 LLNSLQMLYDLAEFIKAVNIR 687


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,799,160
Number of Sequences: 27780
Number of extensions: 270751
Number of successful extensions: 863
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)