Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060979.seq
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76140.1 68414.m08842 prolyl oligopeptidase, putative / proly...    29   2.8  
At4g23690.1 68417.m03410 disease resistance-responsive family pr...    28   4.9  
At4g14760.1 68417.m02271 M protein repeat-containing protein con...    28   4.9  
At1g70710.1 68414.m08151 endo-1,4-beta-glucanase (EGASE) / cellu...    28   4.9  
At3g28180.1 68416.m03521 glycosyl transferase family 2 protein s...    28   6.5  
At3g07330.1 68416.m00874 glycosyl transferase family 2 protein s...    28   6.5  
At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468...    28   6.5  
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ...    27   8.6  
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ...    27   8.6  

>At1g76140.1 68414.m08842 prolyl oligopeptidase, putative / prolyl
           endopeptidase, putative / post-proline cleaving enzyme,
           putative similar to SP|Q9QUR6 Prolyl endopeptidase (EC
           3.4.21.26) (Post-proline cleaving enzyme) {Mus
           musculus}; contains Pfam profiles PF00326: prolyl
           oligopeptidase family, PF02897: Prolyl oligopeptidase,
           N-terminal beta-propeller domain
          Length = 731

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 337 AENVEDITKNISELTVLSFRKLDDVKKLAKHFTKIINHP 453
           AE V++  ++  +LT     K +  +KL ++ TK+I+HP
Sbjct: 43  AEEVKEFVQSQVKLTDSVLEKCETKEKLRQNITKLIDHP 81


>At4g23690.1 68417.m03410 disease resistance-responsive family
           protein / dirigent family protein similar to disease
           resistance response protein 206-d [Pisum sativum]
           gi|508844|gb|AAB18669; similar to dirigent protein
           [Forsythia x intermedia] gi|6694693|gb|AAF25357
          Length = 187

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 379 TVLSFRKLDDVKKLAKHFT 435
           TVLSFRK  D KK  KHF+
Sbjct: 26  TVLSFRKTIDQKKPCKHFS 44


>At4g14760.1 68417.m02271 M protein repeat-containing protein contains
            Pfam profile: PF02370 M protein repeat
          Length = 1676

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +1

Query: 322  FRVEMAENVEDITKNISELTVLSFRKLDDVKKLAKHFTKIINHPITEQSPSIQRYLKNLQ 501
            F  EMAE VED  + +S L  +S      V+ L K           ++S  + + L+NLQ
Sbjct: 1046 FGSEMAEEVEDFVETVSSLREISTGLKRKVETLEKKL-----EGKEKESQGLNKMLENLQ 1100

Query: 502  E 504
            E
Sbjct: 1101 E 1101


>At1g70710.1 68414.m08151 endo-1,4-beta-glucanase (EGASE) /
           cellulase identical to endo-1,4-beta-glucanase
           GB:CAA67157 GI:2440035 from [Arabidopsis thaliana]
          Length = 492

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 218 HPQTQHKRRGRLILALPRKSQNSQQISFILTATINF 325
           HPQ Q+ R G L+       Q+   +SF+L A  N+
Sbjct: 320 HPQVQYSRGGLLVKTGGSNMQHVTSLSFLLLAYSNY 355


>At3g28180.1 68416.m03521 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 673

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 57  RCNYIFIFFFLKNLIVFFYS 116
           + N IF+FF L+ LI+ FYS
Sbjct: 456 KANLIFLFFLLRKLILPFYS 475


>At3g07330.1 68416.m00874 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 682

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 57  RCNYIFIFFFLKNLIVFFYS 116
           + N IF+FF L+ LI+ FYS
Sbjct: 478 KANMIFLFFLLRKLILPFYS 497


>At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468
           Excision repair protein ERCC-6 (Cockayne syndrome
           protein CSB) {Homo sapiens}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain, PF02810: SEC-C motif
          Length = 862

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 199 CPYKLQNVQNNFEIIK*TPKNE 134
           C  KLQ + N+ E+IK  PK+E
Sbjct: 466 CLMKLQQISNHLELIKPNPKDE 487


>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein GI:6996560
           from [Nicotiana plumbaginifolia]
          Length = 430

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 173 LDILEFVRALNIRQFHPQTQHKRR 244
           +D+L + R L + + HPQ QH  R
Sbjct: 373 MDLLAYERQLALAKMHPQAQHSLR 396


>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein GI:6996560
           from [Nicotiana plumbaginifolia]
          Length = 426

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 173 LDILEFVRALNIRQFHPQTQHKRR 244
           +D+L + R L + + HPQ QH  R
Sbjct: 369 MDLLAYERQLALAKMHPQAQHSLR 392


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,625,655
Number of Sequences: 28952
Number of extensions: 234884
Number of successful extensions: 671
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)