Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060978.seq
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          26   0.33 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.4  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   9.4  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   9.4  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   9.4  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    21   9.4  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 282 LVSSKWFFPRWAQAL 326
           L+  K+FFPRW Q L
Sbjct: 646 LILDKFFFPRWRQTL 660


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 368 SKPNTATDDFKNNKPNILSLH 430
           S  NT+T    +NKPN   L+
Sbjct: 427 SNTNTSTSSTNSNKPNSSDLN 447


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -3

Query: 665 YFYRLNLQAPLISVSNFPYNPFYSLP 588
           + Y   + APL +   +PY  ++ +P
Sbjct: 321 FLYDSTITAPLSNPPLWPYTMYFRMP 346


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 613 PITHSIACLPLPS 575
           P+TH+IA  P PS
Sbjct: 337 PLTHNIAHNPYPS 349


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 683 VIIIHLYFYRLNLQAPLISVSNFPYNPFYSLPSFAQHLEKFC 558
           VI+I ++F+  N+QA  +   +   NP  S  +F   +   C
Sbjct: 537 VIVITIFFFTANVQAGELYFMSL-LNPILSNVTFVIDVVYVC 577


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 683 VIIIHLYFYRLNLQAPLISVSNFPYNPFYSLPSFAQHLEKFC 558
           VI+I ++F+  N+QA  +   +   NP  S  +F   +   C
Sbjct: 262 VIVITIFFFTANVQAGELYFMSL-LNPILSNVTFVIDVVYVC 302


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,549
Number of Sequences: 336
Number of extensions: 3948
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)