Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060978.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.10 |||mitochondrial intermembrane space protein sorting p...    75   1e-14
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ...    42   6e-05
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   2.5  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   4.4  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    26   5.8  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    25   7.7  

>SPBC36.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 39/90 (43%), Positives = 54/90 (60%)
 Frame = +3

Query: 258 DGVLHTHRLVSSKWFFPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAV 437
           +GVL+T RL++     PRW   LI  A+ CY  E S V+   R +TL T+NLTF   + V
Sbjct: 46  NGVLYTERLITCHQALPRWILKLIDGAQDCYIRETSYVDLKARTLTLLTSNLTFSDRLRV 105

Query: 438 DETVRYTPHPSDSSKTLLKQEAVVLYKVCL 527
           DETV Y+PHP +   T+ +QEA +    C+
Sbjct: 106 DETVTYSPHP-ELEATVFQQEARIEALACM 134



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 21/43 (48%), Positives = 28/43 (65%)
 Frame = +1

Query: 127 MKIWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKV 255
           MKI+ S H F +P+E V+ A W+KYPN     VI  D ++RKV
Sbjct: 1   MKIFESCHLFQYPFEQVSAAHWQKYPNEHATHVIAVDTLDRKV 43


>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 24/78 (30%), Positives = 41/78 (52%)
 Frame = +3

Query: 258 DGVLHTHRLVSSKWFFPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAV 437
           +G L+T RL+  +   PRWA  L+   K  Y  E S ++P ++++  +T NL     + V
Sbjct: 47  EGRLYTERLLVKQGRLPRWASDLLNVNK-SYILERSVIDPSKQELKSETFNLDHVKILRV 105

Query: 438 DETVRYTPHPSDSSKTLL 491
            E  R+     + SKT++
Sbjct: 106 IEYSRFIQSSENCSKTIV 123



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 133 IWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKV 255
           I T +   N  W TV+ A   +YPNP +  V+  DV+ER V
Sbjct: 4   ICTDKTELNASWNTVSSAWLTRYPNPYSLHVVSADVLERYV 44


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 444 FHQQQCN-DRMLGLLFLKSSVAVLGLLLISH*HN 346
           FH  Q N D++L + FL   V ++G+L  +H HN
Sbjct: 443 FHPPQMNTDQLLLVSFLGLVVNLVGILAFNHGHN 476


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +2

Query: 488  TKTRSCSTVQGVPLSSYMEDLLTNKISLNAGQRKASYRMGYRGSSTLKLRELASSACKST 667
            TK R+ ST+Q  P+S ++  L T+  +      K +    +     + + E A S+ K  
Sbjct: 1587 TKLRAISTIQRFPVSEWVSKLDTHVRNCIKFSHKQNLEEDFIHEPVIDVDEFAISSSKDI 1646

Query: 668  D 670
            D
Sbjct: 1647 D 1647


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +2

Query: 464 SFRFLKN----ITKTRSCSTVQGVPLSSYMEDLLTNKISLN 574
           SF+  +N    +  ++S   V+GV    +++ L TNKI+L+
Sbjct: 14  SFQLFRNYSVCLNSSKSLIRVEGVDAVKFLQGLTTNKITLD 54


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +2

Query: 359 DIRS--KPNTATDDFKNNKPN 415
           D+RS      ATDDF +NKPN
Sbjct: 209 DVRSLVAGTPATDDFSHNKPN 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,975,504
Number of Sequences: 5004
Number of extensions: 65277
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)