Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060978.seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0533 - 29818276-29818866 44 1e-04
09_04_0567 + 18585556-18586113 38 0.010
07_01_0943 - 7959813-7960113,7960193-7960363,7960446-7961278,796... 32 0.37
06_03_1348 - 29497084-29497384,29497464-29497634,29497717-294985... 31 1.1
03_04_0008 - 16274158-16274458,16274791-16275623,16275706-162761... 31 1.1
10_05_0091 - 9085506-9085758,9085838-9085992,9086091-9086132,908... 30 2.0
01_06_1389 - 36969414-36969436,36970027-36970394,36970474-369706... 30 2.0
04_03_0574 - 17338777-17339077,17339390-17340222,17340304-173407... 29 2.6
08_02_0778 + 21119812-21119941,21120030-21120463,21120576-211206... 29 3.4
06_03_0106 + 16702019-16702600 29 4.5
11_06_0576 - 25127807-25128107,25128241-25128357,25128730-251292... 28 6.0
08_02_0942 - 22845270-22845570,22845650-22845820,22845903-228467... 28 6.0
04_03_0421 - 15725045-15725193,15725528-15725599,15725709-157257... 28 6.0
01_03_0214 + 13863123-13863593,13863671-13864132,13864308-138650... 28 6.0
12_01_0801 + 7351171-7351198,7351383-7352020,7352098-7352559,735... 28 7.9
10_08_0674 + 19788198-19789817 28 7.9
06_02_0270 - 13613853-13614153,13614233-13614403,13614486-136153... 28 7.9
04_03_0412 - 15595781-15596081,15596161-15596331,15596414-155972... 28 7.9
02_04_0209 - 20942021-20942181,20942354-20942420,20942651-209427... 28 7.9
>02_05_0533 - 29818276-29818866
Length = 196
Score = 43.6 bits (98), Expect = 1e-04
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +1
Query: 127 MKIWTSEHTFNHPWETVAQAAWRKYPNP 210
M ++T EH + HPW+ V AAWRK+ +P
Sbjct: 1 MVVYTQEHVYRHPWDRVTAAAWRKFTDP 28
Score = 35.9 bits (79), Expect = 0.030
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Frame = +3
Query: 336 AKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPSDSSK-TLLKQEAVVL 512
A +C+ E S V+ +R M + N++ I V+E Y PHP + T +QE +
Sbjct: 85 AALCHCVETSLVDAPRRAMDVVVRNVSLRGLIEVEERSTYRPHPERPEEWTQFRQETTIR 144
Query: 513 YK--VCLSVVTWK--TF*PTKFL*MLGKGRQAIE 602
+ L+ V K T +FL KGR+ +E
Sbjct: 145 CRPLSALAAVAEKVETRCAERFLQNSAKGREVVE 178
>09_04_0567 + 18585556-18586113
Length = 185
Score = 37.5 bits (83), Expect = 0.010
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 136 WTSEHTFNHPWETVAQAAWRKY 201
+T EH + HPW V AAWRK+
Sbjct: 5 YTQEHVYRHPWHRVTAAAWRKF 26
Score = 35.1 bits (77), Expect = 0.052
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = +3
Query: 306 PRWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPSDSSK- 482
P + L+ A + E + V+ R M + + N + V+ET Y PHP +
Sbjct: 70 PLLLRGLVAAADVVLCVEHTTVDGPARAMRVISRNANLRALVHVEETCSYRPHPERPDEW 129
Query: 483 TLLKQEAVVLYKVCLSVVTW 542
TL +QE + +V W
Sbjct: 130 TLFRQETSIRCAPLAAVAAW 149
>07_01_0943 -
7959813-7960113,7960193-7960363,7960446-7961278,
7961360-7961821,7961899-7962606
Length = 824
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +3
Query: 312 WAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPS 470
+A+ I T K ++ + V P MTL T TF + D V+ TP PS
Sbjct: 432 YAKVFIDTVKDTWSGYLLPVPPNDEIMTLGDTRKTFIQWPKEDIVVKMTPRPS 484
>06_03_1348 -
29497084-29497384,29497464-29497634,29497717-29498549,
29498631-29499092,29499171-29499904,29499993-29500122
Length = 876
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +3
Query: 312 WAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPS 470
+A+ I T K ++ V P MTL TF + D V+ TPHPS
Sbjct: 484 YAKVSIDTVKDTWSGYPLPVPPNDEIMTLGDARKTFIQWPKEDIVVKMTPHPS 536
>03_04_0008 -
16274158-16274458,16274791-16275623,16275706-16276167,
16276245-16276882,16277068-16277197
Length = 787
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +3
Query: 312 WAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPS 470
+A+ I T K ++ V P MTL TF + D V+ TPHPS
Sbjct: 452 YAKVSIDTVKDTWSGYPLPVPPNDEIMTLGDARKTFIQWPKEDIVVKMTPHPS 504
>10_05_0091 -
9085506-9085758,9085838-9085992,9086091-9086132,
9086379-9086921,9087003-9087287,9087332-9087463,
9087542-9087729,9088186-9088240
Length = 550
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +3
Query: 309 RWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPS 470
R+A+ I T K ++ V P MTL TF + D V+ TP PS
Sbjct: 261 RYAKVSIDTVKDTWSGYPLPVPPNDELMTLGDARKTFIQWPKEDIVVKMTPRPS 314
>01_06_1389 -
36969414-36969436,36970027-36970394,36970474-36970644,
36970727-36971559,36971642-36972103,36972182-36972915,
36973004-36973133
Length = 906
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +3
Query: 309 RWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPSDSSK 482
R+A+ I T K ++ V P MTL TF + D V+ TP PS ++
Sbjct: 483 RYAKVSIDTVKDTWSGYPLPVPPNDEIMTLGDARKTFIQWPKEDIVVKMTPRPSQPTE 540
>04_03_0574 -
17338777-17339077,17339390-17340222,17340304-17340765,
17340843-17341030,17341244-17341576,17341665-17341796,
17342604-17342643
Length = 762
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +3
Query: 309 RWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPS 470
R+A+ I T K ++ V P MTL TF + D V+ TP PS
Sbjct: 426 RYAKVSIDTVKDTWSGYPLPVPPNDEIMTLGDARKTFIQWPKEDIVVKMTPRPS 479
>08_02_0778 +
21119812-21119941,21120030-21120463,21120576-21120695,
21121356-21121898,21121988-21122172,21122255-21122425,
21122505-21122805
Length = 627
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +3
Query: 312 WAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPS 470
+A+ I T K ++S V P MTL TF + D V+ TP PS
Sbjct: 270 YAKVSIDTVKDTWSSYPLPVPPNDEIMTLGDARKTFIQWPKEDIVVKMTPRPS 322
>06_03_0106 + 16702019-16702600
Length = 193
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -2
Query: 234 CPYDGWIHRI-RIFSPCCLSNCFP 166
CP+ GW H + R+ SP +C P
Sbjct: 85 CPHHGWTHHLRRVISPPSSPDCMP 108
>11_06_0576 -
25127807-25128107,25128241-25128357,25128730-25129271,
25129353-25129814,25129893-25130626,25130715-25130742
Length = 727
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +3
Query: 309 RWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPS 470
R+A+ I T K ++ + P MTL TF + D V+ TP PS
Sbjct: 449 RYAKVSIDTVKDTWSGYPLPMPPNDEIMTLGDARKTFIQWPKEDIVVKMTPRPS 502
>08_02_0942 -
22845270-22845570,22845650-22845820,22845903-22846735,
22846817-22847278,22847357-22848090,22848179-22848308
Length = 876
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 312 WAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPS 470
+A+ I T K ++ V P + MTL TF + D V+ TP PS
Sbjct: 484 YAKVSIDTVKDTWSGYPLPVPPNDKIMTLGDARKTFIQWPKEDIVVKMTPRPS 536
>04_03_0421 -
15725045-15725193,15725528-15725599,15725709-15725784,
15728607-15728679,15728919-15728983,15729423-15729681,
15729761-15729931,15730014-15730846,15731097-15731390,
15731469-15731939
Length = 820
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +3
Query: 309 RWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPS 470
R+A+ I T K ++ V P MTL TF + D V+ TP PS
Sbjct: 296 RYAKVSIDTVKDTWSGYPLPVPPNDEIMTLGDACKTFIQWPKEDIVVKMTPRPS 349
>01_03_0214 +
13863123-13863593,13863671-13864132,13864308-13865038,
13865121-13865291,13865371-13865629,13866069-13866158
Length = 727
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +3
Query: 312 WAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPS 470
+A+ I T K ++ V P MTL TF + D V+ TP PS
Sbjct: 321 YAKVSIDTVKDTWSGYPLPVPPNDEIMTLSDARKTFIQWPKEDIVVKMTPRPS 373
>12_01_0801 +
7351171-7351198,7351383-7352020,7352098-7352559,
7352641-7353105
Length = 530
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = +3
Query: 312 WAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPSDSSKTLL 491
+A+ I T K ++ V P MTL TF + D V+ TP PS ++ +
Sbjct: 418 YAKVSIDTVKDTWSGYPLPVPPNDEIMTLGDARKTFIQWPKEDIVVKMTPRPSRPTELIP 477
Query: 492 KQEAVVLYKVC 524
+ + + C
Sbjct: 478 PKSKLSIEAPC 488
>10_08_0674 + 19788198-19789817
Length = 539
Score = 27.9 bits (59), Expect = 7.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -2
Query: 225 DGWIHRIRIFSPCCLSNCFPW 163
DGW+ +R+ + C S C W
Sbjct: 276 DGWVRLVRLAAESCASVCLEW 296
>06_02_0270 -
13613853-13614153,13614233-13614403,13614486-13615318,
13615401-13615746,13615940-13616127,13616238-13616408
Length = 669
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +3
Query: 312 WAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPS 470
+A+ I T K ++ V P MTL TF + D V+ TP PS
Sbjct: 277 YAKVSIDTVKDTWSGYPLHVPPNDEIMTLGDARKTFIQWPKEDIVVKMTPRPS 329
>04_03_0412 -
15595781-15596081,15596161-15596331,15596414-15597246,
15597369-15597788,15597867-15598337
Length = 731
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +3
Query: 309 RWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPS 470
R+A I T K ++ V P MTL TF + D V+ TP PS
Sbjct: 338 RYAMVSIDTVKDTWSGYPLPVPPNDEIMTLGDACKTFIQWPKEDIVVKMTPRPS 391
>02_04_0209 -
20942021-20942181,20942354-20942420,20942651-20942743,
20943026-20943119,20943690-20943762,20943865-20943973,
20944564-20944663,20945389-20945487,20945571-20945641,
20946067-20946144,20946317-20946403,20946538-20946636
Length = 376
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 285 PIYEYEVHHLHFSFHNICPYDGWIHRIRI 199
PI ++ ++HF FH IC G IH R+
Sbjct: 105 PILSEDIRYVHFDFHRIC---GHIHFERL 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,352,624
Number of Sequences: 37544
Number of extensions: 383664
Number of successful extensions: 871
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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