Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060978.seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14830| Best HMM Match : NADH5_C (HMM E-Value=1.1)                   29   2.7  
SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)                28   8.1  
SB_30671| Best HMM Match : rve (HMM E-Value=6.2e-32)                   28   8.1  

>SB_14830| Best HMM Match : NADH5_C (HMM E-Value=1.1)
          Length = 175

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 279 YEYEVHHLHFSFHNICPYDGWIHRIR 202
           Y Y  HH HF  H+   Y  +IH  R
Sbjct: 100 YHYNHHHHHFHLHHHLHYQNYIHPYR 125


>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
          Length = 197

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 142 MSKSSCFFLISNANCSIEIRISKTKNY 62
           M+KSS  F I+ +NC +E+R+ K   +
Sbjct: 1   MAKSSRTFTIAISNCYVEVRLRKLNGF 27


>SB_30671| Best HMM Match : rve (HMM E-Value=6.2e-32)
          Length = 965

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 261 GVLHTHRLVSSKWFFPRWAQALIGTAKICYASEIS 365
           G+  T  L+  K++FPR  + +     IC++ ++S
Sbjct: 605 GITKTKELLRRKYWFPRMNKRIEDIVSICFSCQVS 639


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,919,278
Number of Sequences: 59808
Number of extensions: 470475
Number of successful extensions: 1056
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)