Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060978.seq
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical pr...    75   4e-14
Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical pr...    41   0.001
U56963-7|AAQ01523.1|  526|Caenorhabditis elegans Amino acid tran...    30   1.8  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical p...    29   3.1  
AC024859-20|ABA00160.2|  322|Caenorhabditis elegans Hypothetical...    28   5.4  
AL110487-2|CAB54425.1|  445|Caenorhabditis elegans Hypothetical ...    28   7.1  

>Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical
           protein F15D3.6 protein.
          Length = 209

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 40/122 (32%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
 Frame = +3

Query: 261 GVLHTHRLVSSKWFFPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVD 440
           G + T R++ S +  P WA  L G +   Y+ E + ++P +++ +L T NL    ++ VD
Sbjct: 46  GKILTERIIQSHFSIPSWATKLTGFSGTQYSHEYTVIDPTRKEFSLTTRNLNGSSFLRVD 105

Query: 441 ETVRYTPHPSDSSKTLLKQEAVVLYKV-CLSVVTWKTF*PTKFL*MLGKGRQAIEWVIGE 617
           E + YTP   D +KT+LKQ+ +V   +   +    KTF  + +     KGRQ +EWVI  
Sbjct: 106 EKLTYTPAHEDPNKTILKQDVIVTITLPAFADYCEKTF-LSIYSQNANKGRQGVEWVIDH 164

Query: 618 VR 623
           ++
Sbjct: 165 LK 166



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 27/41 (65%), Positives = 36/41 (87%)
 Frame = +1

Query: 127 MKIWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVER 249
           M+IW+SEH F+H WETVAQAA+RKYPNP+N ++ G DVV++
Sbjct: 1   MRIWSSEHIFDHEWETVAQAAFRKYPNPLNRSITGIDVVKQ 41


>Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical
           protein B0334.4 protein.
          Length = 210

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +1

Query: 127 MKIWTSEHT-FNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKV 255
           MK+W S +T F + ++ VA A W +YPN     +I  DV+ER++
Sbjct: 1   MKLWDSPNTSFPYSFDEVASAFWDRYPNSHAKHIISEDVLERQI 44


>U56963-7|AAQ01523.1|  526|Caenorhabditis elegans Amino acid
           transporter protein 4 protein.
          Length = 526

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = +3

Query: 348 YASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPSDSSKTLLKQEAVVLYKVCL 527
           YAS+   V  I + ++L    +T  +Y+       Y  HP + S T   Q ++  Y    
Sbjct: 167 YASKFQIVVTIAKMLSLAIIIVTGFYYLIFKGQTEYLEHPFEGSNTNPGQISLAFYGALW 226

Query: 528 SVVTW 542
           S   W
Sbjct: 227 SFAGW 231


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
           protein C08G9.2 protein.
          Length = 2224

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 546 SSM*LLRGTPCTVLQLLVLVMFLRNLKDVEYTVQFHQQQCND 421
           S M  +R TPC  L L   +  LRN    +    F Q QC+D
Sbjct: 550 SCMYPVRSTPCFHLALTAELYSLRNAMKCDRAGNFEQYQCDD 591


>Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical
           protein F45G2.2a protein.
          Length = 1235

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 330 GTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVR 452
           GT K    +E+ E+NP + + T   +NLTF +  +V   +R
Sbjct: 66  GTPKKLTRAEVQEINPAKFEKTEDMSNLTFLNEASVLHNLR 106


>AC024859-20|ABA00160.2|  322|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.24 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/75 (29%), Positives = 37/75 (49%)
 Frame = +2

Query: 455 YSTSFRFLKNITKTRSCSTVQGVPLSSYMEDLLTNKISLNAGQRKASYRMGYRGSSTLKL 634
           ++ S  FL   T  R   T+Q     +++ED+   K++LN+G +       ++G S  K 
Sbjct: 84  FNFSEEFLAFSTSNRQTKTIQ-----NFLEDVRKQKLALNSGPK-------FKGFSFSKT 131

Query: 635 RELASSACKSTDELL 679
            + A    KST+E L
Sbjct: 132 PKPAPPVVKSTEEPL 146


>AL110487-2|CAB54425.1|  445|Caenorhabditis elegans Hypothetical
           protein Y39E4B.2 protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 198 FSPCCLSNCFPWMVECVF*CP 136
           F+ C L +C P+M ECV  CP
Sbjct: 63  FNECLLVHCLPYMEECV--CP 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,362,553
Number of Sequences: 27780
Number of extensions: 363145
Number of successful extensions: 885
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)