Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060977.seq
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20770.1 68416.m02627 ethylene-insensitive 3 (EIN3) identical...    31   0.96 
At2g27050.1 68415.m03250 ethylene-insensitive3-like1 (EIL1) iden...    30   1.3  
At5g41760.1 68418.m05084 nucleotide-sugar transporter family pro...    28   5.1  
At2g13450.1 68415.m01484 hypothetical protein similar to zinc fi...    27   8.9  

>At3g20770.1 68416.m02627 ethylene-insensitive 3 (EIN3) identical to
           ethylene-insensitive3 GI:2224933 from [Arabidopsis
           thaliana]
          Length = 628

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 120 YLLINDTGKPKTGLRGITFYWW*DVLRF-RTGP-TISNY 10
           Y +I + GKP TG       WW D +RF R GP  I+ Y
Sbjct: 117 YGIIPENGKPVTGASDNLREWWKDKVRFDRNGPAAITKY 155


>At2g27050.1 68415.m03250 ethylene-insensitive3-like1 (EIL1)
           identical to ethylene-insensitive3-like1 GI:2224927 from
           [Arabidopsis thaliana]
          Length = 584

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 120 YLLINDTGKPKTGLRGITFYWW*DVLRF-RTGP-TISNY 10
           Y +I + GKP TG       WW D +RF R GP  I+ Y
Sbjct: 118 YGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKY 156


>At5g41760.1 68418.m05084 nucleotide-sugar transporter family
           protein low similarity to SP|Q61420 CMP-sialic acid
           transporter {Mus musculus}; contains Pfam profile
           PF04142: Nucleotide-sugar transporter
          Length = 340

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -3

Query: 681 ITTWMLPLNLGSTCLL 634
           ITTW++ LNLGST LL
Sbjct: 239 ITTWLVVLNLGSTGLL 254


>At2g13450.1 68415.m01484 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 394

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 525 RIEY*LVVTLDKGTLGVLSFRPQRLIVL*YDCFTIKTESKICMY 394
           R+ + L +  D G   ++SF+ +RL  +   CF +      C+Y
Sbjct: 177 RLRFFLRIIFDSGETALISFQYERLRRICSSCFRMTHHRNSCLY 220


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,601,582
Number of Sequences: 28952
Number of extensions: 258070
Number of successful extensions: 379
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)