Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060975.seq
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    28   1.5  
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    27   3.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   5.9  
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb...    25   7.8  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    25   7.8  

>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 481 PSPPPCEVFPAVPATRLLGDRTLLF 555
           P PPP E+    P +R LGD+  LF
Sbjct: 372 PPPPPPELLNHSPKSRPLGDKPYLF 396


>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 531 TWRSDIAIPMLKKMGI 578
           TWR D AIP LK+ GI
Sbjct: 80  TWRLDEAIPSLKEFGI 95


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 676  TKEKVLEPPVLSAMLDLYQLPWTN 605
            + +KVL  P L A L+ Y++ W N
Sbjct: 1095 SSDKVLNQPKLKADLEPYRIDWAN 1118


>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 298

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 519 RNRREYFAWRRRRLATVQXVSRGRPAHQSNSGTSF 415
           +N    F+ +RRR    + + R RP   SN G  F
Sbjct: 246 KNDPPKFSSKRRRFDAFKEMDRQRPGKYSNRGRKF 280


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +2

Query: 98  PCAFKNYSR*SINEYYLPYIYAVKIDFTFRITKTFVSVSNNNTLYR 235
           P   +N S+ S     L      ++DFTFR    F S     T Y+
Sbjct: 478 PVKLENISKTSAGAAILEKTPTAEVDFTFRPDSEFASKKEGYTRYQ 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,281
Number of Sequences: 5004
Number of extensions: 53561
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)