Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060975.seq
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0145 + 1204021-1204296,1204430-1204492,1204667-1204795,120...    29   3.5  
07_01_0936 + 7932772-7933324,7933550-7934414,7934714-7934786           29   4.6  
05_05_0062 + 22039410-22039985,22041467-22041555,22041638-220417...    29   4.6  
09_02_0420 + 9051728-9051754,9053244-9053530,9055263-9055500,905...    28   6.1  
01_06_1731 + 39516897-39517632,39517744-39517912,39517985-395184...    28   6.1  
11_04_0314 - 16277292-16277927,16278385-16278514,16278934-162792...    28   8.0  
05_04_0268 - 19574540-19574582,19574664-19574755,19574843-195749...    28   8.0  

>11_01_0145 +
           1204021-1204296,1204430-1204492,1204667-1204795,
           1205778-1205834,1205915-1206213,1206539-1206630,
           1206747-1206961,1207142-1207325,1207447-1207541,
           1208572-1208628,1209372-1209426,1209955-1210079
          Length = 548

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 380 RRLVVYVFVLALNEVPELD*CAGRPR 457
           R L+ Y FV+ +N VP L   AGRPR
Sbjct: 101 RILIGYYFVVKINVVPGLSSYAGRPR 126


>07_01_0936 + 7932772-7933324,7933550-7934414,7934714-7934786
          Length = 496

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
 Frame = -3

Query: 521 AGTAGNTSHGGGDGSLQCSX*VV----AGQHINPIREPRSMPKRKRKQQGGGQINKRNVH 354
           A   G T  GGGDGS++    +V       HINP+ +  +     R+  GGG+++   +H
Sbjct: 2   ASVDGATRRGGGDGSIRRRRVLVFPLPFQGHINPMLQ-LAGALHGRRGGGGGELSVTVLH 60

Query: 353 RR-------DYPHAAIFKVP 315
            R        YP  A  +VP
Sbjct: 61  TRFNAIDPSRYPELAFAEVP 80


>05_05_0062 +
           22039410-22039985,22041467-22041555,22041638-22041770,
           22041864-22042093,22042199-22042675,22042748-22042934,
           22043536-22043574,22043624-22044052
          Length = 719

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +1

Query: 451 ATTYXLHCSEPSPPPCEVFPAVPATRLLGD 540
           ATT    CS PS     + PAVP  R L D
Sbjct: 12  ATTTTTTCSSPSSTTSPIHPAVPHRRRLND 41


>09_02_0420 +
           9051728-9051754,9053244-9053530,9055263-9055500,
           9057010-9057204,9058075-9058339,9058520-9058827
          Length = 439

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -2

Query: 519 RNRREYFAWRRRRLATVQXVSRGRPAHQSNSG 424
           R RR +  WRRRR AT     R +P   S SG
Sbjct: 305 RRRRRWVEWRRRRRATGHPKGR-QPPGSSGSG 335


>01_06_1731 +
           39516897-39517632,39517744-39517912,39517985-39518488,
           39518619-39518747,39519849-39519990,39520082-39520453
          Length = 683

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 460 YXLHCSEPSPPPCEVFPAVP 519
           + L+C +P PPP +V P  P
Sbjct: 42  HQLYCPQPPPPPYQVMPVPP 61


>11_04_0314 -
           16277292-16277927,16278385-16278514,16278934-16279217,
           16279308-16279431,16280442-16280530,16280630-16280706,
           16280790-16280922,16282131-16282211,16282372-16282539
          Length = 573

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 525 PTTWRSDIAIPMLKKMGITYFNPQVGRL 608
           P TW + +A+  +KK G  Y  P   RL
Sbjct: 232 PVTWYTTVALEKMKKYGAIYLTPFSHRL 259


>05_04_0268 -
           19574540-19574582,19574664-19574755,19574843-19574920,
           19575095-19575232,19575478-19575606,19575889-19576018,
           19576171-19576348,19576715-19576853,19577031-19577120,
           19577260-19577421,19577556-19577720,19577909-19578046,
           19578657-19578836,19579129-19579257,19579442-19579677,
           19579795-19579957,19580030-19580070,19580162-19580489,
           19581416-19581553,19581670-19581873
          Length = 966

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 529 VGLQEPPGILRMAEATARYSAVXKSWPA 446
           +GL  PPG     EA  +Y A  K+ PA
Sbjct: 4   IGLSVPPGFTVSTEACQQYQAAGKTLPA 31


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,771,607
Number of Sequences: 37544
Number of extensions: 390434
Number of successful extensions: 1236
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)