Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060975.seq
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09)         28   6.2  
SB_9832| Best HMM Match : HCaRG (HMM E-Value=3.5e-19)                  28   8.2  
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)                     28   8.2  

>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 528  SGCRNRREYFAWRRRRLATVQXVSRGRPAHQ 436
            + C+N+REY++  RR +  +Q +  GR A +
Sbjct: 2447 AACKNQREYYSQLRRSVIQMQSLYIGRKARK 2477


>SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09)
          Length = 702

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 203 VSVSNNNTLYRXXXYLCYWI 262
           VS+S+N+ LYR   Y+C W+
Sbjct: 676 VSLSSNDGLYRVICYVCRWL 695


>SB_9832| Best HMM Match : HCaRG (HMM E-Value=3.5e-19)
          Length = 165

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 118 FPLIYKRILFTLHLRGENRF 177
           FPL+  RI+  LHLR EN F
Sbjct: 26  FPLLLTRIVQKLHLRDENAF 45


>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
          Length = 859

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 424 NLVQCQNENVNNKAADRSTNAMYIAVTIH 338
           N+ Q  N+  N+K + RS+N + +A T+H
Sbjct: 94  NIEQLVNQAANSKGSSRSSNFLELANTLH 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,238,543
Number of Sequences: 59808
Number of extensions: 441515
Number of successful extensions: 1013
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)