Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060975.seq
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37640.1 68415.m04617 expansin, putative (EXP3) identical to ...    29   2.2  
At5g61850.1 68418.m07760 floral meristem identity control protei...    29   2.9  
At1g20400.1 68414.m02544 myosin heavy chain-related                    29   3.8  
At1g34500.1 68414.m04288 membrane bound O-acyl transferase (MBOA...    28   5.1  
At4g38650.1 68417.m05471 glycosyl hydrolase family 10 protein si...    28   6.7  
At4g38300.1 68417.m05412 glycosyl hydrolase family 10 protein si...    28   6.7  
At5g58480.1 68418.m07324 glycosyl hydrolase family 17 protein si...    27   8.9  
At4g33860.1 68417.m04804 glycosyl hydrolase family 10 protein xy...    27   8.9  
At4g15530.2 68417.m02373 pyruvate phosphate dikinase family prot...    27   8.9  
At4g15530.1 68417.m02372 pyruvate phosphate dikinase family prot...    27   8.9  
At1g13160.1 68414.m01526 SDA1 family protein contains Pfam PF052...    27   8.9  

>At2g37640.1 68415.m04617 expansin, putative (EXP3) identical to
           Alpha-expansin 3 precursor (At-EXP3)[Arabidopsis
           thaliana] SWISS-PROT:O80932; alpha-expansin gene family,
           PMID:11641069
          Length = 262

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 492 AMRSIPGGSCNPTTWRSDIAIPMLKKMGI 578
           A  S  GG CNP     D+A+PM  K+G+
Sbjct: 120 AQPSDDGGWCNPPREHFDLAMPMFLKIGL 148


>At5g61850.1 68418.m07760 floral meristem identity control protein
           LEAFY (LFY) identical to PIR|B38104 LFY floral meristem
           identity control protein, splice form 2 - Arabidopsis
           thaliana; contains Pfam profile PF01698: Floricaula /
           Leafy protein
          Length = 420

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/41 (34%), Positives = 16/41 (39%)
 Frame = +1

Query: 421 GSRIGLMCWPATTYXLHCSEPSPPPCEVFPAVPATRLLGDR 543
           G   GL  W  T   +    P PPP +  P  P T   G R
Sbjct: 5   GFTSGLFRWNPTRALVQAPPPVPPPLQQQPVTPQTAAFGMR 45


>At1g20400.1 68414.m02544 myosin heavy chain-related
          Length = 944

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
 Frame = -1

Query: 604 LPTCGLKYVIPIFFSIG------IAMSDLQVVGLQEPPGILRMAE 488
           L  CGL + IPIF  +G      +A+S L V  ++   G++R+AE
Sbjct: 338 LTECGLSFPIPIFL-LGFVARRKMALSQLTVAAIRYAVGLIRLAE 381


>At1g34500.1 68414.m04288 membrane bound O-acyl transferase (MBOAT)
           family protein / wax synthase-related similar to wax
           synthase [Simmondsia chinensis] GI:5020219; contains
           Pfam profile PF03062: MBOAT family
          Length = 341

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -1

Query: 604 LPTCGLKYVIPIFFS 560
           LP CGL +V+P+FFS
Sbjct: 40  LPICGLFFVLPLFFS 54


>At4g38650.1 68417.m05471 glycosyl hydrolase family 10 protein
           similar to tapetum specific protein GI:3885492 from [Zea
           mays]
          Length = 562

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 405 FWH*TRF-PNWIDVLAGHDLXTAL*RAVASAMRSIPG 512
           FW   ++ P+W+  L G DL +A+ R + S M    G
Sbjct: 290 FWEDPKYNPDWVRNLTGEDLRSAVNRRIKSLMTRYRG 326


>At4g38300.1 68417.m05412 glycosyl hydrolase family 10 protein
           similar to tapetum specific protein GI:3885492 from [Zea
           mays]
          Length = 277

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 405 FWH*TRF-PNWIDVLAGHDLXTAL*RAVASAMRSIPG 512
           FW   ++ P+W+  L G DL +A+ R + S M    G
Sbjct: 112 FWEDPKYNPDWVRNLTGEDLRSAVNRRIKSLMTRYRG 148


>At5g58480.1 68418.m07324 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 476

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
 Frame = +3

Query: 426 PNWIDVLAGHDLXTAL*RA-----VASAMRSIPGGSCNPTTWRSDIA 551
           P W  V    DL  A  RA     VA     +PGGSC+   W  +++
Sbjct: 361 PKWCVVNNNKDLSNASARALEACAVADCTSILPGGSCSGIRWPGNVS 407


>At4g33860.1 68417.m04804 glycosyl hydrolase family 10 protein xylan
           endohydrolase isoenzyme X-I, Hordeum
           vulgare,PID:g1813595; contains Pfam profile PF00331:
           Glycosyl hydrolase family 10
          Length = 576

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 408 WH*TRF-PNWIDVLAGHDLXTAL*RAVASAMRSIPG 512
           W+  ++ P W++ L+G+DL  A+ R V S +    G
Sbjct: 296 WNDPKYQPKWVNALSGNDLYNAVKRRVFSVVSRYKG 331


>At4g15530.2 68417.m02373 pyruvate phosphate dikinase family protein
           contains Pfam profiles: PF01326 pyruvate phosphate
           dikinase, PEP/pyruvate binding domain, PF02896
           PEP-utilizing enzyme, TIM barrel domain
          Length = 960

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 556 GIAMSDLQVVGLQEPPGILRMAEATARYSAVXKSWP 449
           G  ++++  +GL  PPG+    EA  +Y    K  P
Sbjct: 89  GANLAEMASIGLSVPPGLTISTEACQQYQIAGKKLP 124


>At4g15530.1 68417.m02372 pyruvate phosphate dikinase family protein
           contains Pfam profiles: PF01326 pyruvate phosphate
           dikinase, PEP/pyruvate binding domain, PF02896
           PEP-utilizing enzyme, TIM barrel domain
          Length = 898

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 556 GIAMSDLQVVGLQEPPGILRMAEATARYSAVXKSWP 449
           G  ++++  +GL  PPG+    EA  +Y    K  P
Sbjct: 27  GANLAEMASIGLSVPPGLTISTEACQQYQIAGKKLP 62


>At1g13160.1 68414.m01526 SDA1 family protein contains Pfam PF05285:
           SDA1 domain; similar to mystery 45A
           (GI:16797816){Drosophila melanogaster}
          Length = 804

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -3

Query: 428 REPRSMPKRK---RKQQGGGQINKRNVHRRDYPHAAI 327
           RE R   K K   ++++ GG  NK+  HR++ P AAI
Sbjct: 739 REDRGKYKSKAAVKQKKTGGSSNKQKEHRKNMPLAAI 775


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,524,767
Number of Sequences: 28952
Number of extensions: 288520
Number of successful extensions: 772
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)