Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060974.seq
         (450 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P21290 Cluster: Uncharacterized 25.3 kDa protein in 39K...    80   2e-14
UniRef50_P34050 Cluster: 43 kDa protein; n=5; Nucleopolyhedrovir...    65   8e-10
UniRef50_A0EYS9 Cluster: Bv-e31; n=4; Nucleopolyhedrovirus|Rep: ...    46   3e-04
UniRef50_Q8V5V6 Cluster: ORF33; n=3; Nucleopolyhedrovirus|Rep: O...    44   0.002
UniRef50_Q0IL81 Cluster: ORF38; n=2; Nucleopolyhedrovirus|Rep: O...    44   0.002
UniRef50_Q7T9V6 Cluster: ORF_59; n=9; Granulovirus|Rep: ORF_59 -...    40   0.019

>UniRef50_P21290 Cluster: Uncharacterized 25.3 kDa protein in
           39K-P43 intergenic region; n=20;
           Nucleopolyhedrovirus|Rep: Uncharacterized 25.3 kDa
           protein in 39K-P43 intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 216

 Score = 80.2 bits (189), Expect = 2e-14
 Identities = 42/73 (57%), Positives = 45/73 (61%)
 Frame = +2

Query: 173 MRNADRIVYDNRAGQGCLAVCPSRVPEPNAXAADINDTFLEKISIPRXHRDCXDAKVYET 352
           MRNA  +       +  L          NA AAD+NDTFLEKISIPR HRDC DAKVYET
Sbjct: 1   MRNAAGLFMIIEPDKAVLLCARRAYRSANAPAADMNDTFLEKISIPRGHRDCCDAKVYET 60

Query: 353 AVREFVXXTGPXF 391
           AVREFV  TG  F
Sbjct: 61  AVREFVEETGRFF 73


>UniRef50_P34050 Cluster: 43 kDa protein; n=5;
           Nucleopolyhedrovirus|Rep: 43 kDa protein - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 363

 Score = 64.9 bits (151), Expect = 8e-10
 Identities = 29/30 (96%), Positives = 29/30 (96%)
 Frame = +1

Query: 1   RFCRTEKFCSLVNLQLNKDGSKKLKRVQRK 90
           RFCRTEKFC LVNLQLNKDGSKKLKRVQRK
Sbjct: 329 RFCRTEKFCHLVNLQLNKDGSKKLKRVQRK 358


>UniRef50_A0EYS9 Cluster: Bv-e31; n=4; Nucleopolyhedrovirus|Rep:
           Bv-e31 - Ecotropis obliqua NPV
          Length = 243

 Score = 46.4 bits (105), Expect = 3e-04
 Identities = 23/37 (62%), Positives = 25/37 (67%)
 Frame = +2

Query: 281 DTFLEKISIPRXHRDCXDAKVYETAVREFVXXTGPXF 391
           D FLE+ISIPR  RD  D   YETAVREF+  TG  F
Sbjct: 49  DNFLERISIPRGKRDGQDYFDYETAVREFIEETGCFF 85



 Score = 36.3 bits (80), Expect = 0.31
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +3

Query: 189 GLFMIIEPDKAVLLCAXRAYRS 254
           GL M+IEPD+AVLLCA ++Y S
Sbjct: 5   GLLMLIEPDRAVLLCAHQSYGS 26


>UniRef50_Q8V5V6 Cluster: ORF33; n=3; Nucleopolyhedrovirus|Rep:
           ORF33 - Helicoverpa zea SNPV
          Length = 238

 Score = 44.0 bits (99), Expect = 0.002
 Identities = 22/35 (62%), Positives = 23/35 (65%)
 Frame = +2

Query: 287 FLEKISIPRXHRDCXDAKVYETAVREFVXXTGPXF 391
           FLEKISIPR   D  D   YETAVREF+  TG  F
Sbjct: 34  FLEKISIPRGKWDTRDIFDYETAVREFIEETGTFF 68



 Score = 36.7 bits (81), Expect = 0.23
 Identities = 15/21 (71%), Positives = 19/21 (90%)
 Frame = +3

Query: 186 TGLFMIIEPDKAVLLCAXRAY 248
           +GL +I+EPD+AVLLCA RAY
Sbjct: 4   SGLLIIMEPDRAVLLCARRAY 24


>UniRef50_Q0IL81 Cluster: ORF38; n=2; Nucleopolyhedrovirus|Rep:
           ORF38 - Leucania separata nuclear polyhedrosis virus
           (LsNPV)
          Length = 261

 Score = 44.0 bits (99), Expect = 0.002
 Identities = 22/41 (53%), Positives = 25/41 (60%)
 Frame = +2

Query: 269 ADINDTFLEKISIPRXHRDCXDAKVYETAVREFVXXTGPXF 391
           A  +  FLEKISIPR   D  D   YETA+REF+  TG  F
Sbjct: 51  ASESTNFLEKISIPRGKWDSRDIFDYETAIREFIEETGTIF 91


>UniRef50_Q7T9V6 Cluster: ORF_59; n=9; Granulovirus|Rep: ORF_59 -
           Adoxophyes orana granulovirus (AoGV)
          Length = 225

 Score = 40.3 bits (90), Expect = 0.019
 Identities = 20/35 (57%), Positives = 24/35 (68%)
 Frame = +2

Query: 287 FLEKISIPRXHRDCXDAKVYETAVREFVXXTGPXF 391
           F+EK+SIPR   D  + K YETAVREF+  TG  F
Sbjct: 44  FVEKLSIPRGKHDAGE-KDYETAVREFIEETGLVF 77


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 362,489,521
Number of Sequences: 1657284
Number of extensions: 5437504
Number of successful extensions: 10929
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10926
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)