Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060974.seq
         (450 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1)                    28   4.1  
SB_39862| Best HMM Match : PAN (HMM E-Value=0.24)                      27   9.5  

>SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = -1

Query: 159 HLKNCAHEH-HRLXPDCN 109
           H KNCAHE  H   P+CN
Sbjct: 156 HAKNCAHEDVHCTNPECN 173


>SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1)
          Length = 674

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +2

Query: 125 KRWCSCAQFFKCQICKM---RNADRIVYDNR-AGQGCLAVCPSRVPE 253
           ++W  C +++KC  C     ++A R   D    G+ C  +C   VP+
Sbjct: 342 QKWTFCQRYYKCNDCGKSVDKSAQREDGDEHVCGEYCCNICKQLVPQ 388


>SB_39862| Best HMM Match : PAN (HMM E-Value=0.24)
          Length = 146

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 156 LKNCAHEHHRLXPDCNYL 103
           L +CAHE  +L P CNY+
Sbjct: 62  LISCAHECLKLFPRCNYI 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,862,185
Number of Sequences: 59808
Number of extensions: 194177
Number of successful extensions: 344
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)