Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060974.seq
         (450 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55420.1 68414.m06339 DC1 domain-containing protein contains ...    27   4.4  
At2g43270.1 68415.m05378 F-box family protein contains Pfam PF00...    27   7.7  

>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 725

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 134 CSCAQFFKCQICKMRNADRIVYDNRAGQGCLAVCPSRVPEP-NAXAADINDT 286
           CS  +F     C MR    I+   ++ +  L + P R+P P +A    +NDT
Sbjct: 219 CSICKFNLNLDCSMRQPPPIISHLKSHEHTLTLFPIRLPLPCDACGLSLNDT 270


>At2g43270.1 68415.m05378 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 387

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -3

Query: 208 SIIINNPVSVSHFTYLTLKKL 146
           SIIIN+P   S FT LT+ KL
Sbjct: 268 SIIINHPWESSWFTVLTVSKL 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,050,238
Number of Sequences: 28952
Number of extensions: 123988
Number of successful extensions: 250
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)