Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060973.seq
         (691 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4DIV4 Cluster: Protein phosphatase 2A regulatory subun...    34   3.8  
UniRef50_UPI0000ECA3B8 Cluster: UPI0000ECA3B8 related cluster; n...    33   8.7  

>UniRef50_Q4DIV4 Cluster: Protein phosphatase 2A regulatory subunit,
           putative; n=3; Trypanosoma|Rep: Protein phosphatase 2A
           regulatory subunit, putative - Trypanosoma cruzi
          Length = 709

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
 Frame = -1

Query: 496 VSHSNSSFFKYFYRFFLIEAIRLITIVGIRGFEYKVFIK-I*ILNGTYRRIDIVTNILRF 320
           + H ++S   Y  +    E ++  TI GIR F ++ F+  I    GT R +DI    L+ 
Sbjct: 431 IEHPDTSIETYSIKPPFEEEVQE-TIFGIRCFPHEPFLLFIATTAGTVRVLDIRQR-LKL 488

Query: 319 FHREPLLITIIF*HRDSPFFVLLSLCIIVP-*KFVV 215
           FH+ PL+    +   D+ F   L+ C + P  +FVV
Sbjct: 489 FHQTPLVFKNTYCDEDTSFSSPLTDCALSPCGRFVV 524


>UniRef50_UPI0000ECA3B8 Cluster: UPI0000ECA3B8 related cluster; n=1;
           Gallus gallus|Rep: UPI0000ECA3B8 UniRef100 entry -
           Gallus gallus
          Length = 135

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +1

Query: 502 YFCWTFTYVIICDSSSTTLLSIAGSRKPFTPHDLHKWTSSANF*MSFWRFVAYIHCCVR 678
           +F   F  ++ C S   T+  + GSR+P T H L  + S  +F  S   F+ Y  C  R
Sbjct: 19  WFILPFFPLLACSSRRVTVCQLLGSRRPPTFHRLRSFCSFLSF--SLLHFLLYRLCLYR 75


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,086,298
Number of Sequences: 1657284
Number of extensions: 13139107
Number of successful extensions: 27128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27125
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)