Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060973.seq
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.1  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    22   4.1  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    22   4.1  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    22   5.4  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 392 FVFESPYSYDSYQTNGL 442
           FV   PYS DSY   G+
Sbjct: 416 FVNNQPYSRDSYNLAGM 432


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = -1

Query: 454 FFLIEAIRLITIVGIRGFEYKVFIKI*ILNGTYRRIDIVTNILRFFHREPLLITIIF*HR 275
           FFLI    L TIVG       +FI+  I   T      V+   +F    P  + +     
Sbjct: 349 FFLINGTLLHTIVGAVTVYLIMFIQFDIATTTKGAAPAVSKARQFLPALPGYVPVYIRPG 408

Query: 274 DSP 266
           D+P
Sbjct: 409 DTP 411


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = -1

Query: 454 FFLIEAIRLITIVGIRGFEYKVFIKI*ILNGTYRRIDIVTNILRFFHREPLLITIIF*HR 275
           FFLI    L TIVG       +FI+  I   T      V+   +F    P  + +     
Sbjct: 174 FFLINGTLLHTIVGAVTVYLIMFIQFDIATTTKGAAPAVSKARQFLPALPGYVPVYIRPG 233

Query: 274 DSP 266
           D+P
Sbjct: 234 DTP 236


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 475 FFKYFYRFFLIEAIRLITIVGIRGFEYKV 389
           F  Y     L +A   I+ VG+R F+Y +
Sbjct: 120 FNLYMVLLLLFDAYLWISSVGVRMFQYYI 148


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,778
Number of Sequences: 336
Number of extensions: 3345
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)