Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060973.seq
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    29   0.84 
SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       26   5.9  
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    25   7.8  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    25   7.8  

>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 196  LNHSATSLQIFMERLCREREVQRRDYLCVRKLLLL 300
            L+ +  S  +  E+LCR+     +DY  VRK+LLL
Sbjct: 1262 LDEAEASSSLKEEQLCRQEFCYGKDYSNVRKMLLL 1296


>SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = -1

Query: 505 NNEVSHSNSSFFKY-FYRFFL-IEAIRLITIVGIRGFE--YKVFIKI*ILNGTYRRIDIV 338
           +N++ HS   FF + FY F L I  I   + +   G    + +   + +L+   RR+ ++
Sbjct: 4   SNKIKHSIFQFFVFPFYYFLLIITEIGFSSCIQYSGLSAYFPIKCTLSLLSSPIRRVQVI 63

Query: 337 TNILRFFHREPLLI 296
           ++ L    +  LL+
Sbjct: 64  SDSLNVKGKRLLLV 77


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 1   RHETARRVTDISGLAVSIGESRPA 72
           +H+T RR  D+SG++V++ +   A
Sbjct: 106 KHDTKRRGIDVSGVSVNLSQMMKA 129


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 529 IICDSSSTTLLSIAGSRKPFTPHDLHKWTSSANF 630
           I+ D+    L  + G     TP +L +W  +A+F
Sbjct: 368 IVLDALCPVLPELVGGSADLTPSNLTRWEGAADF 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,953
Number of Sequences: 5004
Number of extensions: 59773
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)