Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060973.seq
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410...    28   8.0  
01_03_0311 + 14905995-14906393,14906982-14907009,14907893-149079...    28   8.0  

>06_01_0579 +
           4099039-4099086,4099798-4099848,4100151-4100286,
           4100287-4100401,4100496-4100528,4101037-4101166,
           4101663-4101751,4102042-4102148,4102238-4102309,
           4102384-4102764,4104907-4105064,4105581-4105674,
           4106082-4106089,4106297-4106387,4107136-4107289,
           4108257-4108377,4108468-4108551,4108946-4109065,
           4109181-4109393,4109482-4109544,4109668-4109783,
           4110132-4110190,4111126-4111445
          Length = 920

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 571 GSRKPFTPHDLHKWTSSANF*MSFWRFVAYIHCCV 675
           G  + F P  L KW  S       W  +AY  CCV
Sbjct: 157 GGNRIFRPKLLSKWLLSFLVASPGWFLIAYYFCCV 191


>01_03_0311 +
           14905995-14906393,14906982-14907009,14907893-14907930,
           14908741-14908878,14909180-14909356,14909497-14909550,
           14909713-14909813,14910445-14910739
          Length = 409

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 365 WHLQTDRYSD*HLAFFSSRTPFNNNNFLTQR*SLLCTSLSL 243
           WH+  +RY D    F++S T  N    L     LL T   +
Sbjct: 259 WHIDPERYGDSRPHFYTSWTVLNEQTVLRLHQVLLLTQFQM 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,212,143
Number of Sequences: 37544
Number of extensions: 337086
Number of successful extensions: 658
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)