Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060973.seq
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8851| Best HMM Match : rve (HMM E-Value=6.2e-17)                    29   2.7  
SB_45206| Best HMM Match : SAM_2 (HMM E-Value=2.8e-05)                 29   3.6  
SB_40539| Best HMM Match : DUF1613 (HMM E-Value=2.1)                   28   8.2  
SB_26401| Best HMM Match : DUF1613 (HMM E-Value=2)                     28   8.2  
SB_13514| Best HMM Match : DUF1613 (HMM E-Value=9.5)                   28   8.2  
SB_57933| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_54334| Best HMM Match : DUF1613 (HMM E-Value=9.5)                   28   8.2  
SB_49623| Best HMM Match : DUF1613 (HMM E-Value=2.1)                   28   8.2  
SB_35078| Best HMM Match : Dickkopf_N (HMM E-Value=5)                  28   8.2  
SB_19888| Best HMM Match : CagY_M (HMM E-Value=3.7)                    28   8.2  

>SB_8851| Best HMM Match : rve (HMM E-Value=6.2e-17)
          Length = 469

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 484 LNGLLHYFCWTFTYVIICDSSSTTLLSIAGSRK 582
           L GL  YF +T+TY +I D   + +  +A + K
Sbjct: 100 LGGLFPYFAYTYTYKMIADQLWSAMHEVAAAAK 132


>SB_45206| Best HMM Match : SAM_2 (HMM E-Value=2.8e-05)
          Length = 169

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 478 NYLNGLLHYFCWTFTYVIICDSSSTTLLSIAGSRKPFTPHDLHKWTS 618
           N  +  L Y C+TF Y  +    ++T   ++     +TP D+ KW +
Sbjct: 27  NPAHSALQYTCYTFVYDTLAMILTSTEPLVSKPVTSWTPEDVSKWVA 73


>SB_40539| Best HMM Match : DUF1613 (HMM E-Value=2.1)
          Length = 235

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 259 QRRDYLCVRKLLLLKGVLDEKNARC*SLYLSVCR 360
           Q ++++C   L  LKG+L  ++    S Y+S CR
Sbjct: 143 QWKNWVCYYSLFALKGILPSRHYDLWSHYVSACR 176


>SB_26401| Best HMM Match : DUF1613 (HMM E-Value=2)
          Length = 345

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 259 QRRDYLCVRKLLLLKGVLDEKNARC*SLYLSVCR 360
           Q ++++C   L  LKG+L  ++    S Y+S CR
Sbjct: 140 QWKNWVCYYSLFALKGILPSRHYDLWSHYVSACR 173


>SB_13514| Best HMM Match : DUF1613 (HMM E-Value=9.5)
          Length = 207

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 259 QRRDYLCVRKLLLLKGVLDEKNARC*SLYLSVCR 360
           Q ++++C   L  LKG+L  ++    S Y+S CR
Sbjct: 143 QWKNWVCYYSLFALKGILPSRHYDLWSHYVSACR 176


>SB_57933| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 259 QRRDYLCVRKLLLLKGVLDEKNARC*SLYLSVCR 360
           Q ++++C   L  LKG+L  ++    S Y+S CR
Sbjct: 61  QWKNWVCYYSLFALKGILPSRHYDLWSHYVSACR 94


>SB_54334| Best HMM Match : DUF1613 (HMM E-Value=9.5)
          Length = 206

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 259 QRRDYLCVRKLLLLKGVLDEKNARC*SLYLSVCR 360
           Q ++++C   L  LKG+L  ++    S Y+S CR
Sbjct: 142 QWKNWVCYYSLFALKGILPSRHYDLWSHYVSACR 175


>SB_49623| Best HMM Match : DUF1613 (HMM E-Value=2.1)
          Length = 680

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 259 QRRDYLCVRKLLLLKGVLDEKNARC*SLYLSVCR 360
           Q ++++C   L  LKG+L  ++    S Y+S CR
Sbjct: 101 QWKNWVCYYSLFALKGILPSRHYDLWSHYVSACR 134


>SB_35078| Best HMM Match : Dickkopf_N (HMM E-Value=5)
          Length = 248

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 259 QRRDYLCVRKLLLLKGVLDEKNARC*SLYLSVCR 360
           Q ++++C   L  LKG+L  ++    S Y+S CR
Sbjct: 134 QWKNWVCYYSLFALKGILPSRHYDLWSHYVSACR 167


>SB_19888| Best HMM Match : CagY_M (HMM E-Value=3.7)
          Length = 389

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 259 QRRDYLCVRKLLLLKGVLDEKNARC*SLYLSVCR 360
           Q ++++C   L  LKG+L  ++    S Y+S CR
Sbjct: 275 QWKNWVCYYSLFALKGILPSRHYDLWSHYVSACR 308


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,853,433
Number of Sequences: 59808
Number of extensions: 421529
Number of successful extensions: 874
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)