Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060973.seq
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73912-3|CAE18063.1|  828|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z73912-2|CAA98144.4|  859|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AB096633-1|BAC76733.1|  828|Caenorhabditis elegans leucyl-tRNA s...    28   7.2  

>Z73912-3|CAE18063.1|  828|Caenorhabditis elegans Hypothetical
           protein ZK524.3b protein.
          Length = 828

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -3

Query: 638 DIQKFADDVHLCKS*GVNGFRDPAMERRVVEELS 537
           ++ K AD   L    GV+G R P+++RR++EE+S
Sbjct: 707 EVDKDADIEFLLMIDGVSGGR-PSLDRRIIEEMS 739


>Z73912-2|CAA98144.4|  859|Caenorhabditis elegans Hypothetical
           protein ZK524.3a protein.
          Length = 859

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -3

Query: 638 DIQKFADDVHLCKS*GVNGFRDPAMERRVVEELS 537
           ++ K AD   L    GV+G R P+++RR++EE+S
Sbjct: 738 EVDKDADIEFLLMIDGVSGGR-PSLDRRIIEEMS 770


>AB096633-1|BAC76733.1|  828|Caenorhabditis elegans leucyl-tRNA
           synthetase (mitochondrial)protein.
          Length = 828

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -3

Query: 638 DIQKFADDVHLCKS*GVNGFRDPAMERRVVEELS 537
           ++ K AD   L    GV+G R P+++RR++EE+S
Sbjct: 707 EVDKDADIEFLLMIDGVSGGR-PSLDRRIIEEMS 739


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,515,001
Number of Sequences: 27780
Number of extensions: 322118
Number of successful extensions: 632
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)