Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060973.seq
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.4  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 24/77 (31%), Positives = 36/77 (46%)
 Frame = +1

Query: 148 KACFHIPSSGRAGNVELNHSATSLQIFMERLCREREVQRRDYLCVRKLLLLKGVLDEKNA 327
           KA   IP       V L+ SA  L +    L   +  QRR +L  R+ L ++ V++E++ 
Sbjct: 174 KAPAQIPVDVLVLTVTLSASAMVLGLSSYSLTEFQ--QRRAFLETRQSLEVQLVIEEQST 231

Query: 328 RC*SLYLSVCRCHLKFK 378
               L LSV   H+  K
Sbjct: 232 EQERLLLSVLPEHVAVK 248


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 661 CMQQIAKKTFRNLRTTSTYV 602
           CM +IA ++F  L   STYV
Sbjct: 3   CMLEIAARSFLLLSIASTYV 22


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 188 TLN*ITLPHHYKFLWND 238
           T   +T+P+HY +L+ D
Sbjct: 132 TFQTMTIPNHYLWLYKD 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,336
Number of Sequences: 438
Number of extensions: 4542
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)