Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060973.seq
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70940.1 68414.m08184 auxin transport protein, putative (PIN3...    30   1.3  
At3g25290.1 68416.m03158 auxin-responsive family protein similar...    29   2.9  

>At1g70940.1 68414.m08184 auxin transport protein, putative (PIN3)
           similar to auxin transport protein [Arabidopsis
           thaliana] gi|5817301|gb|AAD52695
          Length = 640

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 120 SDRGA-EVRVAIPGQXXRGTTLTDTHCQSGDVG 25
           SD+GA E+R+ +P Q   G T    H  SGD G
Sbjct: 389 SDQGAKEIRMLVPDQSHNGETKAVAHPASGDFG 421


>At3g25290.1 68416.m03158 auxin-responsive family protein similar to
           auxin-induced protein AIR12 GI:11357190 [Arabidopsis
           thaliana]
          Length = 393

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 212 HHYKFLWNDYAEREKYKEGTISVLENYCY*KGFSMKKTQDVSHYIYPSVGAI 367
           H Y+F WN Y     Y   T+ ++  +   KG ++ K QD     Y +V A+
Sbjct: 315 HKYRFYWNIYHHGVGYAILTLGIINVF---KGLNILKPQDTYKTAYIAVIAV 363


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,431,251
Number of Sequences: 28952
Number of extensions: 290892
Number of successful extensions: 550
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)