Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060972.seq
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.0  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    23   1.8  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   2.3  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   4.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.4  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 592 DVRNLVNQLYEALNVREHQIR 654
           +VR +VNQ YEA  V E+ IR
Sbjct: 116 NVRAVVNQYYEAEVVSEYVIR 136


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 653 LIWCSLTFRASYS*FTKFLTSLN*VTSSMLRRSC 552
           L++CS+TF A     T   TS+    SS+L   C
Sbjct: 50  LVYCSVTFFALSELLTDLATSILLKVSSLLIGFC 83


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 458 PARLPPVQQHAPPHGLLLSP 399
           P++ PP   +  P G++L+P
Sbjct: 436 PSQAPPTYDYGIPQGVVLNP 455



 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 310 GQPPAVCHRHLFR*HWFDLVGAFFDPC 230
           G+PP +C+ H F    + ++GA    C
Sbjct: 115 GEPPRICYYH-FTLELYTVLGAACQVC 140


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 458 PARLPPVQQHAPPHGLLLSP 399
           P++ PP   +  P G++L+P
Sbjct: 436 PSQAPPTYDYGIPQGVVLNP 455



 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 310 GQPPAVCHRHLFR*HWFDLVGAFFDPC 230
           G+PP +C+ H F    + ++GA    C
Sbjct: 115 GEPPRICYYH-FTLELYTVLGAACQVC 140


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 466 LFE*HHRVITGNRFRLIINDTEYYVKSPSQ 555
           + E H    TGN     + +  YY  SP Q
Sbjct: 154 MIEDHENDTTGNSGEGSLQENRYYNNSPDQ 183


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 154  IYQIAKNHGVDDGD 195
            + Q+ K  G+DDGD
Sbjct: 1387 VKQLQKLQGIDDGD 1400


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 154  IYQIAKNHGVDDGD 195
            + Q+ K  G+DDGD
Sbjct: 1387 VKQLQKLQGIDDGD 1400


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 154  IYQIAKNHGVDDGD 195
            + Q+ K  G+DDGD
Sbjct: 1387 VKQLQKLQGIDDGD 1400


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 154  IYQIAKNHGVDDGD 195
            + Q+ K  G+DDGD
Sbjct: 1387 VKQLQKLQGIDDGD 1400


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 625 PRTVDSPNS*RHSTE*PLPCLD 560
           P  V +P+S R  +E PL C D
Sbjct: 57  PGDVPTPSSPRSISEDPLNCRD 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,968
Number of Sequences: 336
Number of extensions: 2746
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)