Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060972.seq
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    31   0.16 
SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac...    27   1.9  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    27   1.9  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    27   2.5  
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo...    26   5.8  

>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 533 YSVSLMMSRNRFPVMTRWCHSKRSGPARL-PPVQQHAP 423
           Y +  ++   + P+  RWCHSKRS    + PP+++ +P
Sbjct: 656 YDLQKILKLKKTPIC-RWCHSKRSSEWFVAPPIEESSP 692


>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 550 SQERLSMEEVTQLSDVRNLVNQLYEALNVREHQIRKERELRGAL 681
           +Q  L+ + VT+   +  L+NQL       +HQ+ K ++L+ ++
Sbjct: 57  AQRDLAKDLVTKFMQIDTLINQLPGISTAPKHQLEKIKKLQNSI 100


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +2

Query: 200  SPDFLHDRMHTWIKEC-AHQ-VEPVLSEEV 283
            S D ++ R H W +EC +H  + PVLS +V
Sbjct: 993  SIDDVYKRRHVWYRECRSHYFISPVLSNQV 1022


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +2

Query: 203 PDFLHDRMHTWIKECAHQVEPVLSEEVTVTYR 298
           P  +    H W++ C  +   + ++EV++T+R
Sbjct: 359 PFIMDPTSHNWVERCCKKAIDLAAQEVSLTFR 390


>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 408 QKTVGWSVLLHWRQTSGSGSLRVTPSSHYWKPI 506
           QKT+  + +L  R  + +G LR TPS++  K I
Sbjct: 198 QKTLITNTILTKRPINANGDLRYTPSNYSLKDI 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,438
Number of Sequences: 5004
Number of extensions: 47936
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)