Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060972.seq
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0658 - 35335639-35335731,35335814-35335871,35336213-353363... 33 0.16
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 29 3.4
10_07_0090 + 12772571-12772699,12773144-12773284 29 3.4
10_07_0084 + 12748685-12749146 29 3.4
04_04_0626 - 26686411-26686518,26686876-26686953,26687763-266878... 29 3.4
04_04_0702 + 27383876-27384862 29 4.5
04_04_0701 + 27373057-27374013 29 4.5
10_02_0144 + 5815403-5815520,5815551-5816314 28 6.0
08_02_1625 + 28336168-28336409,28336491-28336564,28337162-283372... 28 6.0
12_01_0036 - 299140-299190,300001-300078,300202-300205,300657-30... 28 7.9
11_01_0038 - 284152-284202,285014-285091,285215-285218,285669-28... 28 7.9
07_03_1767 + 29338867-29338912,29339261-29339325,29339571-293396... 28 7.9
04_04_1096 + 30855192-30855225,30856135-30856208,30856293-308564... 28 7.9
03_06_0194 + 32249846-32250562 28 7.9
03_01_0228 + 1802038-1803265,1804207-1804245,1804638-1804783,180... 28 7.9
>03_06_0658 -
35335639-35335731,35335814-35335871,35336213-35336355,
35336624-35336703,35336916-35337075,35337531-35337668,
35338487-35338567,35338640-35338693,35339192-35339297,
35339615-35339682,35340076-35340225,35340401-35340519,
35341151-35341362,35342118-35342205,35342365-35342479,
35343083-35343274,35343809-35344018
Length = 688
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 206 DFLHDRMHTWIKECAHQVEPVLSEEVTVTYRRGLPVITVPLPSRRER 346
+ L+D + TW+ +C+ Q+ P+L + T GL +T L RR++
Sbjct: 630 NLLYDELRTWMVDCSFQIGPILIVDEPFTVDNGL--LTPTLKLRRDK 674
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 467 RSGPARLPPVQQHAPPHGLLLSPARGGRRRFE 372
+ P PP Q H PP + + RGG RR +
Sbjct: 108 QQAPPPPPPTQSHQPPPPVAVRAPRGGPRRLK 139
>10_07_0090 + 12772571-12772699,12773144-12773284
Length = 89
Score = 29.1 bits (62), Expect = 3.4
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = -2
Query: 494 VMTRWCHSKRSGPARLPPVQQHA---PPHGLLLSPARGGRRRFERLDVV*SGIARVLKAA 324
V T W + SGP RLP + Q P L L+P G RRR R V A V A
Sbjct: 20 VATMWM--QLSGPRRLPHLAQGRWGRPNTDLFLTPGIGARRRHYRAGVGRRAPAAVATAP 77
Query: 323 VP*SRATP 300
+ S P
Sbjct: 78 IRESDVDP 85
>10_07_0084 + 12748685-12749146
Length = 153
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 473 SKRSGPARLPPVQQHAPPHGLLLSPARGGRRRFERLDVV*SGIAR 339
S+R G A PP ++ APP LL A+ R F V+ +AR
Sbjct: 45 SRRPGEAAAPPPEKKAPP---LLRAAKASSRSFRAARVLAVAVAR 86
>04_04_0626 -
26686411-26686518,26686876-26686953,26687763-26687810,
26688012-26688167,26688725-26688795,26689949-26690055,
26690145-26691112
Length = 511
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 444 RQTSGSGSLRVTPSSHYWKPISTHH*RHGVLR 539
RQ +G +R+ P S YWKP+ + H + VLR
Sbjct: 20 RQIHENGQIRL-PKSLYWKPLHSGHFENIVLR 50
>04_04_0702 + 27383876-27384862
Length = 328
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 181 VDDGDLLAGLSSRPYAHMDQRMRPPSRT-SAI*RGDGDIPPGVARDHGTAAFKTR 342
V+D G+ RP+ +R P R S + G D P AR + AAF+ R
Sbjct: 133 VEDFRKYRGVRQRPWGKFAAEIRDPKRRGSRVWLGTYDTPVEAARAYDRAAFRMR 187
>04_04_0701 + 27373057-27374013
Length = 318
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 181 VDDGDLLAGLSSRPYAHMDQRMRPPSRT-SAI*RGDGDIPPGVARDHGTAAFKTR 342
V+D G+ RP+ +R P R S + G D P AR + AAF+ R
Sbjct: 134 VEDFRKYRGVRQRPWGKFAAEIRDPKRRGSRVWLGTYDTPVEAARAYDRAAFRMR 188
>10_02_0144 + 5815403-5815520,5815551-5816314
Length = 293
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 497 PVMTRWCHSKRSGPARLPPVQQHAPPHGLLLS-PARGGRRR 378
PV+ RW + RSG R PP ++H G ++ PA R R
Sbjct: 190 PVLPRWAENSRSG-TRSPPCRRHLLALGSSVAMPAAEARLR 229
>08_02_1625 +
28336168-28336409,28336491-28336564,28337162-28337236,
28337433-28337459,28339261-28339634,28339746-28340492
Length = 512
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +2
Query: 116 NKS*FVFFTNI*RSIK*QRIMVSTMATSSPDFLH 217
++S +VF+ N + + RI+VS ++SPD++H
Sbjct: 460 DRSLYVFWDNFHPTERANRIIVSQFMSASPDYMH 493
>12_01_0036 -
299140-299190,300001-300078,300202-300205,300657-300757,
301636-302145,302552-303034,303672-304163
Length = 572
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +2
Query: 347 CRFTLRPVSQTVGDLLEQVKAEDRGVERAAALAADERVRISSSDTIESLLE 499
CR V VG L + A R + RAAA AAD R+ + DT+ L+
Sbjct: 79 CRTRRAAVEAAVGSDLPRA-ATVRDLVRAAAAAADRIRRLGAFDTVSITLD 128
>11_01_0038 -
284152-284202,285014-285091,285215-285218,285669-285769,
286642-287151,287550-288032,288668-289156
Length = 571
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +2
Query: 347 CRFTLRPVSQTVGDLLEQVKAEDRGVERAAALAADERVRISSSDTIESLLE 499
CR V VG L + A R + RAAA AAD R+ + DT+ L+
Sbjct: 78 CRTRRAAVEAAVGSDLPRA-ATVRDLVRAAAAAADRIRRLGAFDTVSITLD 127
>07_03_1767 +
29338867-29338912,29339261-29339325,29339571-29339642,
29339913-29339956,29340047-29340158,29340879-29340950,
29341449-29341511,29341957-29342034,29342110-29342202,
29342294-29342413,29342762-29342845,29343094-29343309,
29343401-29343448,29343761-29343871,29344170-29344267,
29345004-29345248,29345764-29345832,29345919-29345983,
29346168-29346337,29346434-29346512,29346614-29346869,
29347416-29347461,29347602-29347710,29347820-29347882,
29350075-29350107,29350924-29351442
Length = 991
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 553 QERLSMEEVTQLSDVRN--LVNQLYEALNVREH 645
Q+R EE + RN LV +LYEA+N R+H
Sbjct: 837 QQRQEEEEDLESEQQRNQWLVIRLYEAINARDH 869
>04_04_1096 +
30855192-30855225,30856135-30856208,30856293-30856467,
30856842-30856918,30857042-30857279,30857414-30857478,
30857628-30858086,30858253-30858465,30858613-30859002
Length = 574
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 464 SGPARLPPVQQHAPPHGLLLSPARGGRRRFERLD 363
+G ++ P+Q++ P GLL SP G + F D
Sbjct: 165 TGMSQFDPMQEYYLPDGLLYSPTPGFHQHFGSFD 198
>03_06_0194 + 32249846-32250562
Length = 238
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 461 GPARLPPVQQHAPPHGLLLSPARGGRRRFERLD 363
G R+P V +H P H + S GRRR E+ D
Sbjct: 82 GGRRVPGVLRHTPTHAPVPSVFGDGRRRQEQWD 114
>03_01_0228 +
1802038-1803265,1804207-1804245,1804638-1804783,
1804891-1804958,1805045-1805147,1805287-1805400
Length = 565
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 209 FLHDRMHTWIKECAHQVEPVLSEEVTVTYRRGLPVITVPLPSR 337
F+ DR+ IK +QV P E + +T+ V +P P R
Sbjct: 456 FVVDRLKELIKYKGYQVPPAELEALLLTHPEVTDVAVIPFPDR 498
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,643,004
Number of Sequences: 37544
Number of extensions: 364837
Number of successful extensions: 1132
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -