Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060972.seq
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24939| Best HMM Match : No HMM Matches (HMM E-Value=.)              82   5e-16
SB_6593| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  

>SB_24939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 868

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 38/79 (48%), Positives = 55/79 (69%)
 Frame = +2

Query: 272 SEEVTVTYRRGLPVITVPLPSRRERCRFTLRPVSQTVGDLLEQVKAEDRGVERAAALAAD 451
           S+ + V ++ G PV+TVPLPSRRE C+FTLRP+S++V D +E VK ED G+ER A     
Sbjct: 622 SQNIQVHFKSGFPVVTVPLPSRRELCQFTLRPLSESVKDFIENVKEEDGGIERVAVYDPS 681

Query: 452 ERVRISSSDTIESLLETDF 508
              RIS S  ++ L++++F
Sbjct: 682 GS-RISGSTKVDVLMKSNF 699



 Score = 31.1 bits (67), Expect = 0.87
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = +1

Query: 487 VITGNRFRLIINDTEYYVKSPSQERL--SMEEV-TQLSDVRNLVNQL 618
           V+  + F+L+IND EY VK   +E+L   +EE+   L  +  L ++L
Sbjct: 693 VLMKSNFKLVINDVEYDVKLQKEEKLLSKLEEIKADLQPMEKLKSEL 739


>SB_6593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
 Frame = +2

Query: 212 LHDRMHTWIKECAHQVEPVLSEEVTVTYRRGLPVITVPLPSRRERC-RFTLRPVSQTVGD 388
           LH  +   +KECA  +E  L+    +TYR     +T  L   + RC RF  +  S  V  
Sbjct: 127 LHIELDALVKECAFVLERFLTPVTCLTYR--ALAVTYGLRQLKHRCWRFLCQRFSD-VCS 183

Query: 389 LLEQVKAEDRGVERAAALAADERVRISSSDTIESLL---ETD 505
             E ++  +   E A  L +D  +        +SLL   ETD
Sbjct: 184 TQEFLELSEE--ELAEVLVSDAIMPCGEIQVFDSLLRWTETD 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,699,438
Number of Sequences: 59808
Number of extensions: 380670
Number of successful extensions: 1268
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)