Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060972.seq
         (684 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034235-1|AAH34235.1|  351|Homo sapiens coiled-coil domain cont...    93   8e-19
BC010682-1|AAH10682.1|  322|Homo sapiens CCDC109A protein protein.     93   8e-19
CR457234-1|CAG33515.1|  248|Homo sapiens FLJ20647 protein.             46   1e-04
BC002633-1|AAH02633.1|  248|Homo sapiens coiled-coil domain cont...    45   3e-04
AK000654-1|BAA91309.1|  248|Homo sapiens protein ( Homo sapiens ...    45   3e-04

>BC034235-1|AAH34235.1|  351|Homo sapiens coiled-coil domain
           containing 109A protein.
          Length = 351

 Score = 93.1 bits (221), Expect = 8e-19
 Identities = 48/100 (48%), Positives = 69/100 (69%), Gaps = 1/100 (1%)
 Frame = +2

Query: 212 LHDRMHTWIKECAHQVEPVL-SEEVTVTYRRGLPVITVPLPSRRERCRFTLRPVSQTVGD 388
           +H R+ +W    A     V+ S++VTV Y+ GLPVI+V LPSRRERC+FTL+P+S +VG 
Sbjct: 51  VHQRIASWQNLGAVYCSTVVPSDDVTVVYQNGLPVISVRLPSRRERCQFTLKPISDSVGV 110

Query: 389 LLEQVKAEDRGVERAAALAADERVRISSSDTIESLLETDF 508
            L Q++ EDRG++R A  + D  VR+++S  I+ LL  DF
Sbjct: 111 FLRQLQEEDRGIDRVAIYSPD-GVRVAASTGIDLLLLDDF 149



 Score = 62.9 bits (146), Expect = 1e-09
 Identities = 27/55 (49%), Positives = 38/55 (69%)
 Frame = +1

Query: 505 FRLIINDTEYYVKSPSQERLSMEEVTQLSDVRNLVNQLYEALNVREHQIRKEREL 669
           F+L+IND  Y+V+ P ++ LS E    L+DV+ LV QLY  L + +HQ+ KEREL
Sbjct: 149 FKLVINDLTYHVRPPKRDLLSHENAATLNDVKTLVQQLYTTLCIEQHQLNKEREL 203


>BC010682-1|AAH10682.1|  322|Homo sapiens CCDC109A protein protein.
          Length = 322

 Score = 93.1 bits (221), Expect = 8e-19
 Identities = 48/100 (48%), Positives = 69/100 (69%), Gaps = 1/100 (1%)
 Frame = +2

Query: 212 LHDRMHTWIKECAHQVEPVL-SEEVTVTYRRGLPVITVPLPSRRERCRFTLRPVSQTVGD 388
           +H R+ +W    A     V+ S++VTV Y+ GLPVI+V LPSRRERC+FTL+P+S +VG 
Sbjct: 43  VHQRIASWQNLGAVYCSTVVPSDDVTVVYQNGLPVISVRLPSRRERCQFTLKPISDSVGV 102

Query: 389 LLEQVKAEDRGVERAAALAADERVRISSSDTIESLLETDF 508
            L Q++ EDRG++R A  + D  VR+++S  I+ LL  DF
Sbjct: 103 FLRQLQEEDRGIDRVAIYSPD-GVRVAASTGIDLLLLDDF 141


>CR457234-1|CAG33515.1|  248|Homo sapiens FLJ20647 protein.
          Length = 248

 Score = 46.0 bits (104), Expect = 1e-04
 Identities = 20/66 (30%), Positives = 40/66 (60%)
 Frame = +1

Query: 487 VITGNRFRLIINDTEYYVKSPSQERLSMEEVTQLSDVRNLVNQLYEALNVREHQIRKERE 666
           ++  N F+L+IN   Y V+ P +E+ S E   ++  +++LV++L+  L++ E Q ++E  
Sbjct: 40  ILLMNDFKLVINKIAYDVQCPKREKPSNEHTAEMEHMKSLVHRLFTILHLEESQKKREHH 99

Query: 667 LRGALG 684
           L   +G
Sbjct: 100 LLEKIG 105



 Score = 35.5 bits (78), Expect = 0.18
 Identities = 18/44 (40%), Positives = 28/44 (63%)
 Frame = +2

Query: 377 TVGDLLEQVKAEDRGVERAAALAADERVRISSSDTIESLLETDF 508
           TVG  L+ ++ ED+G++ AA   AD  + IS+S  ++ LL  DF
Sbjct: 4   TVGSFLQDLQNEDKGIKTAAIFTADGNM-ISASTLMDILLMNDF 46


>BC002633-1|AAH02633.1|  248|Homo sapiens coiled-coil domain
           containing 109B protein.
          Length = 248

 Score = 44.8 bits (101), Expect = 3e-04
 Identities = 19/61 (31%), Positives = 38/61 (62%)
 Frame = +1

Query: 487 VITGNRFRLIINDTEYYVKSPSQERLSMEEVTQLSDVRNLVNQLYEALNVREHQIRKERE 666
           ++  N F+L+IN   Y V+ P +E+ S E   ++  +++LV++L+  L++ E Q ++E  
Sbjct: 40  ILLMNDFKLVINKIAYDVQCPKREKPSNEHTAEMEHMKSLVHRLFTILHLEESQKKREHH 99

Query: 667 L 669
           L
Sbjct: 100 L 100



 Score = 35.5 bits (78), Expect = 0.18
 Identities = 18/44 (40%), Positives = 28/44 (63%)
 Frame = +2

Query: 377 TVGDLLEQVKAEDRGVERAAALAADERVRISSSDTIESLLETDF 508
           TVG  L+ ++ ED+G++ AA   AD  + IS+S  ++ LL  DF
Sbjct: 4   TVGSFLQDLQNEDKGIKTAAIFTADGNM-ISASTLMDILLMNDF 46


>AK000654-1|BAA91309.1|  248|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20647 fis, clone KAT02147. ).
          Length = 248

 Score = 44.8 bits (101), Expect = 3e-04
 Identities = 19/61 (31%), Positives = 38/61 (62%)
 Frame = +1

Query: 487 VITGNRFRLIINDTEYYVKSPSQERLSMEEVTQLSDVRNLVNQLYEALNVREHQIRKERE 666
           ++  N F+L+IN   Y V+ P +E+ S E   ++  +++LV++L+  L++ E Q ++E  
Sbjct: 40  ILLMNDFKLVINKIAYDVQCPKREKPSNEHTAEMEHMKSLVHRLFTILHLEESQKKREHH 99

Query: 667 L 669
           L
Sbjct: 100 L 100



 Score = 35.5 bits (78), Expect = 0.18
 Identities = 18/44 (40%), Positives = 28/44 (63%)
 Frame = +2

Query: 377 TVGDLLEQVKAEDRGVERAAALAADERVRISSSDTIESLLETDF 508
           TVG  L+ ++ ED+G++ AA   AD  + IS+S  ++ LL  DF
Sbjct: 4   TVGSFLQDLQNEDKGIKTAAIFTADGNM-ISASTLMDILLMNDF 46


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,085,356
Number of Sequences: 237096
Number of extensions: 1819378
Number of successful extensions: 4346
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4344
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)