Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060972.seq
(684 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41558-1|AAK39248.1| 333|Caenorhabditis elegans Hypothetical pr... 71 1e-12
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein. 30 1.3
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical... 30 1.3
Z81525-1|CAB04256.1| 897|Caenorhabditis elegans Hypothetical pr... 28 7.1
U53147-2|AAA96114.2| 935|Caenorhabditis elegans Hypothetical pr... 28 7.1
U19615-1|AAB51351.1| 897|Caenorhabditis elegans Nucampholin pro... 28 7.1
AL031630-20|CAE17995.1| 122|Caenorhabditis elegans Hypothetical... 28 7.1
Z79605-1|CAB01904.1| 719|Caenorhabditis elegans Hypothetical pr... 27 9.4
U10413-2|AAA20090.1| 719|Caenorhabditis elegans lin-15A protein... 27 9.4
U10411-1|AAA20087.1| 719|Caenorhabditis elegans lin-15A protein... 27 9.4
>U41558-1|AAK39248.1| 333|Caenorhabditis elegans Hypothetical
protein K02B2.3 protein.
Length = 333
Score = 70.5 bits (165), Expect = 1e-12
Identities = 31/76 (40%), Positives = 52/76 (68%)
Frame = +2
Query: 272 SEEVTVTYRRGLPVITVPLPSRRERCRFTLRPVSQTVGDLLEQVKAEDRGVERAAALAAD 451
S +++ + GLP++ VPLPSR E C+FT+RP+S T+G L E ++ EDRG++ A +
Sbjct: 48 SSPLSIRFEYGLPLLDVPLPSRNEPCQFTMRPLSDTIGSLCEFLRQEDRGIDYVAVYGTN 107
Query: 452 ERVRISSSDTIESLLE 499
V++++ +IE LL+
Sbjct: 108 -GVKLATCTSIEHLLQ 122
>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
Length = 2553
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 520 NDTEYYVKSPSQERLSMEEVT-QLSDVRNLVNQLYEALNVREHQIRKEREL 669
N E V+S QE ++ ++ +SD LVN + + ++ +E +RKEREL
Sbjct: 2483 NAAERLVQSAQQEMIARDDRNIAISD--RLVNGIAQVMDAQEEVLRKEREL 2531
>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
protein Y71G12B.11a protein.
Length = 2553
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 520 NDTEYYVKSPSQERLSMEEVT-QLSDVRNLVNQLYEALNVREHQIRKEREL 669
N E V+S QE ++ ++ +SD LVN + + ++ +E +RKEREL
Sbjct: 2483 NAAERLVQSAQQEMIARDDRNIAISD--RLVNGIAQVMDAQEEVLRKEREL 2531
>Z81525-1|CAB04256.1| 897|Caenorhabditis elegans Hypothetical
protein F33A8.1 protein.
Length = 897
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -2
Query: 512 SRNRFPVMTRWCHSKRSGPARLPPVQQHAPPHGLLLSPARGGRRRFER 369
SR P R ++ S PV+ +P SP+R RRR ER
Sbjct: 84 SRETSPAPKRSKETRESESPEKSPVRSRSPRRSSARSPSRSPRRRRER 131
>U53147-2|AAA96114.2| 935|Caenorhabditis elegans Hypothetical
protein C01B7.1a protein.
Length = 935
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -3
Query: 457 PLVCRQCSSTLHPTVFCFHLLEEVA--DGLRDWT*CKAASLAS*R-QRYRDHGQ 305
PL CR C T+ + FH+L +A G+ +T CK + R Q + HG+
Sbjct: 560 PLQCRLCGKTMQNRIRGFHILWHMAKDKGINRYT-CKYCNFGHDRSQSVQVHGK 612
>U19615-1|AAB51351.1| 897|Caenorhabditis elegans Nucampholin
protein.
Length = 897
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -2
Query: 512 SRNRFPVMTRWCHSKRSGPARLPPVQQHAPPHGLLLSPARGGRRRFER 369
SR P R ++ S PV+ +P SP+R RRR ER
Sbjct: 84 SRETSPAPKRSKETRESESPEKSPVRSRSPRRSSARSPSRSPRRRRER 131
>AL031630-20|CAE17995.1| 122|Caenorhabditis elegans Hypothetical
protein Y38H6C.23 protein.
Length = 122
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 581 VTSSMLRRSCDGLLT*YS-VSLMMSRNRFPVMTRWCHSKRSGPAR 450
+ SS++ +CDG+ Y + ++S P+ WC K GP +
Sbjct: 9 IISSVVINNCDGVCLNYEGLGNVISALTDPLCNAWCEIKLCGPGK 53
>Z79605-1|CAB01904.1| 719|Caenorhabditis elegans Hypothetical
protein ZK678.1 protein.
Length = 719
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -2
Query: 509 RNRFPVMTRWCHSKRSGPARLPPVQQHAPPHGLLLSP 399
RNR P + + + S P +PP P LL+ P
Sbjct: 677 RNRNPHLAKQVAAAPSEPKHIPPTHMEKKPEELLMDP 713
>U10413-2|AAA20090.1| 719|Caenorhabditis elegans lin-15A protein
protein.
Length = 719
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -2
Query: 509 RNRFPVMTRWCHSKRSGPARLPPVQQHAPPHGLLLSP 399
RNR P + + + S P +PP P LL+ P
Sbjct: 677 RNRNPHLAKQVAAAPSEPKHIPPTHMEKKPEELLMDP 713
>U10411-1|AAA20087.1| 719|Caenorhabditis elegans lin-15A protein
protein.
Length = 719
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -2
Query: 509 RNRFPVMTRWCHSKRSGPARLPPVQQHAPPHGLLLSP 399
RNR P + + + S P +PP P LL+ P
Sbjct: 677 RNRNPHLAKQVAAAPSEPKHIPPTHMEKKPEELLMDP 713
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,205,834
Number of Sequences: 27780
Number of extensions: 276269
Number of successful extensions: 1024
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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