Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060972.seq
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +3

Query: 354  LHYVQSLKPSATSSSR*KQKTVGWSVLLHWRQTSGSGSLRVTPSSHY 494
            LHY  +++   ++       +   S+LLHW+     G+     + HY
Sbjct: 1395 LHYTLTVQVPPSAPVLYVTSSTSSSILLHWKSGHNGGASLTGYTLHY 1441


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +3

Query: 354  LHYVQSLKPSATSSSR*KQKTVGWSVLLHWRQTSGSGSLRVTPSSHY 494
            LHY  +++   ++       +   S+LLHW+     G+     + HY
Sbjct: 1391 LHYTLTVQVPPSAPVLYVTSSTSSSILLHWKSGHNGGASLTGYTLHY 1437


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 597  QEFGESTVRGSERERAPDKE 656
            ++ G ST+RG ER+R+  K+
Sbjct: 1237 EKTGVSTLRGQERQRSLFKD 1256


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 470 KRSGPARLPPVQQHAPP 420
           K+SG  +  PVQ+HA P
Sbjct: 212 KKSGYKKPTPVQKHALP 228


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 295 PPGVARDHGTAAFK 336
           PPGV  DHG  A K
Sbjct: 334 PPGVPGDHGDHAPK 347


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 295 PPGVARDHGTAAFK 336
           PPGV  DHG  A K
Sbjct: 334 PPGVPGDHGDHAPK 347


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 295 PPGVARDHGTAAFK 336
           PPGV  DHG  A K
Sbjct: 273 PPGVPGDHGDHAPK 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,499
Number of Sequences: 438
Number of extensions: 3281
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)