Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060972.seq
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14070.1 68417.m02172 AMP-binding protein, putative similar t...    30   1.2  
At1g48610.1 68414.m05437 AT hook motif-containing protein contai...    28   5.0  
At3g13062.3 68416.m01630 expressed protein weak similarity to SP...    28   6.6  
At3g13062.2 68416.m01631 expressed protein weak similarity to SP...    28   6.6  
At3g13062.1 68416.m01629 expressed protein weak similarity to SP...    28   6.6  
At2g31085.1 68415.m03796 Clavata3 / ESR-Related-6 (CLE6) CLAVATA...    28   6.6  
At3g23790.1 68416.m02990 AMP-binding protein, putative similar t...    27   8.8  

>At4g14070.1 68417.m02172 AMP-binding protein, putative similar to
           AMP-binding protein [gi:1617272] from Brassica napus;
           contains Pfam AMP-binding enzyme domain PF00501;
           identical to cDNA acyl-CoA synthetase-like protein
           GI:20799730
          Length = 727

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +2

Query: 167 QRIMVSTMATSSPDFLHDRMHTWIKECAHQVEPVLSEEVTVTYRRGLPVITVPL 328
           QR+   T   +    ++  +  W  EC+ QV PVL  +   T   GL   T+ +
Sbjct: 656 QRVDPETSKETLKSLVYQELRKWTSECSFQVGPVLIVDDPFTIDNGLMTPTMKI 709


>At1g48610.1 68414.m05437 AT hook motif-containing protein contains
           Pfam profile PF02178: AT hook motif
          Length = 212

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +2

Query: 296 RRGL-PVITVPL-PSRRERCRFTLRPVSQTVGDLLEQVKAEDRGVERAAA 439
           RRG  P + V   P RR R   ++ PV+  VGDL ++     + V+ AAA
Sbjct: 144 RRGRKPTVEVAAQPVRRTRKSTSVAPVAANVGDLKKRTALLQKKVKEAAA 193


>At3g13062.3 68416.m01630 expressed protein weak similarity to
           SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP)
           {Homo sapiens}
          Length = 411

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 218 DRMHTWIKECAHQVEPVLSEEVTVTY-RRGLPVITVP 325
           D+ + +IKEC H + P   + V V+Y R G  +  VP
Sbjct: 215 DKFYCFIKECDHNMVPQQRKYVRVSYFRSGWRIRKVP 251


>At3g13062.2 68416.m01631 expressed protein weak similarity to
           SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP)
           {Homo sapiens}
          Length = 440

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 218 DRMHTWIKECAHQVEPVLSEEVTVTY-RRGLPVITVP 325
           D+ + +IKEC H + P   + V V+Y R G  +  VP
Sbjct: 207 DKFYCFIKECDHNMVPQQRKYVRVSYFRSGWRIRKVP 243


>At3g13062.1 68416.m01629 expressed protein weak similarity to
           SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP)
           {Homo sapiens}
          Length = 403

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 218 DRMHTWIKECAHQVEPVLSEEVTVTY-RRGLPVITVP 325
           D+ + +IKEC H + P   + V V+Y R G  +  VP
Sbjct: 207 DKFYCFIKECDHNMVPQQRKYVRVSYFRSGWRIRKVP 243


>At2g31085.1 68415.m03796 Clavata3 / ESR-Related-6 (CLE6)
           CLAVATA3/ESR-Related 6 (CLE6)
          Length = 81

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +2

Query: 305 LPVITVPLPSRRERCRFTLRPVSQTVGDLLEQVKAEDRGVERAAALAADERVRISSSDTI 484
           L + + P+ S + R   T RP   T+GD+  QV   + G++ +     DER  +  S+ +
Sbjct: 14  LIIYSTPILSSQARILRTYRPT--TMGDMDSQVLLRELGIDLSKFKGQDERRFLVDSERV 71


>At3g23790.1 68416.m02990 AMP-binding protein, putative similar to
           AMP-binding protein GB:CAA96521 from [Brassica napus]
           (Plant Mol. Biol. (1997) 33 (5), 911-922); contains Pfam
           AMP-binding enzyme domain PF00501; identical to cDNA
           acyl-CoA synthetase-like protein  GI:20799732
          Length = 722

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 212 LHDRMHTWIKECAHQVEPVLSEEVTVTYRRGLPVITVPLPSRRER 346
           +++ +  W  +C+ QV PVL  +   T   GL  +T  +  RR++
Sbjct: 666 VYEELRKWTSQCSFQVGPVLIVDEPFTIDNGL--MTPTMKIRRDK 708


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,547,867
Number of Sequences: 28952
Number of extensions: 265985
Number of successful extensions: 685
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)