Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060971.seq
         (682 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   0.76 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   0.76 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   0.76 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   0.76 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.3  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    22   4.0  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   9.3  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   9.3  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -1

Query: 478 QRTEPNAD-KDYDLNADRGPNGDEKFHTLN*HLNACYEPDYSSWDAKTHENRLLKAWH 308
           +R +  AD K  DL+  +   GDE + T++ H +A       + D  T        WH
Sbjct: 514 RRRDDEADVKTEDLDEIQKEKGDEYYETISNHTDASSAKAVKNSDHITRIYACATMWH 571


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -1

Query: 478 QRTEPNAD-KDYDLNADRGPNGDEKFHTLN*HLNACYEPDYSSWDAKTHENRLLKAWH 308
           +R +  AD K  DL+  +   GDE + T++ H +A       + D  T        WH
Sbjct: 514 RRRDDEADVKTEDLDEIQKEKGDEYYETISNHTDASSAKAVKNSDHITRIYACATMWH 571


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -1

Query: 478 QRTEPNAD-KDYDLNADRGPNGDEKFHTLN*HLNACYEPDYSSWDAKTHENRLLKAWH 308
           +R +  AD K  DL+  +   GDE + T++ H +A       + D  T        WH
Sbjct: 514 RRRDDEADVKTEDLDEIQKEKGDEYYETISNHTDASSAKAVKNSDHITRIYACATMWH 571


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -1

Query: 478 QRTEPNAD-KDYDLNADRGPNGDEKFHTLN*HLNACYEPDYSSWDAKTHENRLLKAWH 308
           +R +  AD K  DL+  +   GDE + T++ H +A       + D  T        WH
Sbjct: 514 RRRDDEADVKTEDLDEIQKEKGDEYYETISNHTDASSAKAVKNSDHITRIYACATMWH 571


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +2

Query: 197 VHPQPQLRRGLDPVXERPSPSKHAPNRAPLPTIYHHVMP 313
           ++PQPQ+    +      S + + PN + L  +    MP
Sbjct: 417 INPQPQITSPSNTNTSTSSTNSNKPNSSDLNMLIKETMP 455


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -1

Query: 388 HLNACYEPDYSSWDAKTHENRLLKAW 311
           H   CY   Y SW ++  +  +  AW
Sbjct: 139 HQAICYPLTYCSWTSRRSKVMVYLAW 164


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +2

Query: 233 PVXERPSPSKHAPNR 277
           P  + P PS+H P +
Sbjct: 96  PKLQEPQPSQHCPRK 110


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +2

Query: 209 PQLRRGLDPVXERPSPSKHAPNRAP 283
           PQ      P   R +  KH PNR P
Sbjct: 94  PQTSAPTGPPIVRCALRKHKPNRKP 118


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,760
Number of Sequences: 336
Number of extensions: 3394
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)