Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060971.seq
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 30 0.36
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18... 29 0.62
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 28 1.4
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 27 1.9
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism... 27 3.3
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos... 26 5.8
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 26 5.8
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 26 5.8
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy... 25 7.7
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.7
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 25 7.7
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 29.9 bits (64), Expect = 0.36
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 193 RSSPAAAATSWAGSRXRAPVPKQARTEPRTVTNYISPRDAMPSVVYSRESLHPNSSSPVR 372
+SSP A+ S S AP +Q + ++ Y SPR + S + + + N SPV
Sbjct: 190 QSSPNLASLSKQPSTVHAPSTRQRDLKSSILSLYASPRPQVSSSSITTNATYQNLPSPVS 249
Query: 373 SKRSDA 390
+ + +
Sbjct: 250 TSTTSS 255
>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
S18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 29.1 bits (62), Expect = 0.62
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 242 ERPSPSKHAPNRAPLPTIYHHVMPCLQ*SILVSLCIPTRVVRFVAS 379
E P+P + P+P H CL+ + ++LC P R + F AS
Sbjct: 90 EEPNPIMQGTDTIPMPFYLH--AKCLKNNTHITLCSPERKIIFRAS 133
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 648 PXRLVDXKLKHLNI*RPSLYNYYAETNNDV 559
P +VD L HLN PSLY+ ++ NDV
Sbjct: 235 PVTVVDYLLFHLNRIDPSLYSKWSLPTNDV 264
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 594 LYNYYAETNNDVCYNEICIDSFQCMEHNQQAETAERW 484
L+N YA+ + Y EIC+ FQC ++ E W
Sbjct: 1107 LFNNYADP---LGYGEICLSIFQCADYRGINEILNCW 1140
>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 199 SPAAAATSWAGSRXRAPVPKQARTEPRTVTNYI 297
+PA A SWA R + +PK E R V+N++
Sbjct: 249 TPANIAISWAVKRGTSVLPKSV-NESRIVSNFL 280
>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 265 RTEPRTVTNYISPRDAMPSVVYSRESL 345
+ + + ++NY+ P + P + YSR SL
Sbjct: 24 KQDDQVISNYLKPVRSYPYIKYSRSSL 50
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +1
Query: 325 VYSRESLHPNSSSPVRSKRS------DANLMCEISHPRWDLGPRSDRSPYPHS 465
+Y+ E + N V+S R+ DA M ++H RW+ + + Y H+
Sbjct: 204 IYNTEKIRSNICDAVQSSRNGICRHVDARAMVNLNHSRWERRYYARQVTYLHN 256
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 480 WPIALPFRLVDCVPYIGTSRYIF 548
+P+A F LV+CV YI +S Y F
Sbjct: 513 YPLAPIFSLVNCVLYIRSSVYRF 535
>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 325 VYSRESLHPNSSSPVRSKRSDANLMCEIS 411
+Y + HPNS +R D+N +C +S
Sbjct: 168 LYKVKQHHPNSRLLLRISTDDSNSLCRLS 196
>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 511
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 540 YIFRYNTHHYSSPHNNY 590
YIF + +HH +SP N Y
Sbjct: 73 YIFAHISHHKASPENYY 89
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -1
Query: 505 SRNGRAMGQQRTEPNADKDYDLNADRGPNGD--EKFH 401
++NGR +R + N YDL+ G D E FH
Sbjct: 119 TKNGRIRSSRREDDNRIPFYDLDVAEGAEDDLQEDFH 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,892
Number of Sequences: 5004
Number of extensions: 51242
Number of successful extensions: 157
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -