Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060971.seq
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0318 + 24347364-24348826,24348920-24349048,24349158-243492... 31 0.64
12_02_1239 - 27275110-27275445 31 1.1
11_03_0171 + 11111534-11113207 31 1.1
09_04_0237 - 15936630-15937250,15937457-15937534,15938874-159389... 30 2.0
06_03_0475 - 21217253-21217639,21217717-21218757 29 4.5
05_01_0445 + 3547176-3547577,3548625-3549557,3550246-3550524,355... 29 4.5
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 29 4.5
02_05_0312 - 27792127-27792360,27793282-27793412,27793534-27793837 29 4.5
04_03_0720 - 19008890-19009204,19009324-19009593 28 6.0
01_06_1805 - 39999987-40000169,40000648-40000974,40001724-400020... 28 6.0
01_03_0301 - 14785898-14786299,14786785-14787234 28 6.0
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 28 7.9
05_02_0022 + 5682045-5682301,5682477-5682720 28 7.9
03_02_0816 + 11487811-11488708,11488835-11489235 28 7.9
>04_04_0318 +
24347364-24348826,24348920-24349048,24349158-24349293,
24349447-24349535,24349631-24349742,24349836-24349942,
24350033-24350129
Length = 710
Score = 31.5 bits (68), Expect = 0.64
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +1
Query: 247 PVPKQARTEPRTVTNYISPRDAMPSVVY-SRESLHPNSSSPVRSKRSDANLMCEISHPRW 423
P+P Q R SP D P+V S E L ++ S V + + + M IS RW
Sbjct: 177 PLPPQDHIPERLAVEK-SPMDVEPAVASESPEQLQEHAESRVMEEEEEYSTMRNISTSRW 235
Query: 424 DLGPRSDRSPYPHSARFAVGPS 489
+ PH + + P+
Sbjct: 236 AGANDDEEEGAPHRKKKSASPA 257
>12_02_1239 - 27275110-27275445
Length = 111
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Frame = +1
Query: 187 ALRSSPAAAATSWAGSRXRAP---VPKQARTEPRTVTNYISPRDAMPSVVYSRESLHPNS 357
ALR+ A W S AP PK R EPR + + P+ R+ + P
Sbjct: 16 ALRAVQKPPAKPWRASPSAAPGPAPPKVYRVEPREFRDLVQRLTGAPAPPPPRQPVAPAQ 75
Query: 358 SSPVRSKRSDANL 396
PVR +A L
Sbjct: 76 PVPVRPAVDEAQL 88
>11_03_0171 + 11111534-11113207
Length = 557
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 138 GSGAAGVSYRCSVGDATRPCASRRCTRGAA 49
G G G+ Y+ VG+ T P A RR GAA
Sbjct: 435 GKGGKGIVYKVVVGNGTTPVAVRRLGGGAA 464
>09_04_0237 -
15936630-15937250,15937457-15937534,15938874-15938973,
15940414-15942278
Length = 887
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/60 (36%), Positives = 29/60 (48%)
Frame = +1
Query: 205 AAAATSWAGSRXRAPVPKQARTEPRTVTNYISPRDAMPSVVYSRESLHPNSSSPVRSKRS 384
A +AT+ A R A T PRT T +SP +PSV + H SS+ S+RS
Sbjct: 725 AVSATNTASCRHEGVATATAHTHPRTSTQAVSP---LPSVAIAMPCEH--SSTTRWSRRS 779
>06_03_0475 - 21217253-21217639,21217717-21218757
Length = 475
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = -3
Query: 263 ACLGTGARSRDPAHD---VAAAAGELRNATHATA 171
A G GA P H AAAAGELR A H+ A
Sbjct: 226 AAAGAGAALFHPTHGDDAAAAAAGELRQAYHSRA 259
>05_01_0445 +
3547176-3547577,3548625-3549557,3550246-3550524,
3550624-3550752,3550813-3550869
Length = 599
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/71 (25%), Positives = 29/71 (40%)
Frame = +1
Query: 196 SSPAAAATSWAGSRXRAPVPKQARTEPRTVTNYISPRDAMPSVVYSRESLHPNSSSPVRS 375
++ AAA + G R + P P++ PR + P A + S S +SSS
Sbjct: 6 TTSAAAIPTGGGGRRQHPHPRRPGLRPRRLHRLRLPAQAAAAAAASSPSTSSSSSSSSTP 65
Query: 376 KRSDANLMCEI 408
L+ E+
Sbjct: 66 AEGGGRLVAEL 76
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 193 RSSPAAAATSWAGSRXRAPVPKQARTEP 276
RS+ AA A W G++ R+PVP ++ P
Sbjct: 538 RSNNAAIAIPWNGTKPRSPVPLSSQILP 565
>02_05_0312 - 27792127-27792360,27793282-27793412,27793534-27793837
Length = 222
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 5 TSSARRTESDPAASRAAP--RVQRREAQGRVASPTEHR*DTPAAPEP 139
T+ R S P+AS A P R++R A EH+ AAP+P
Sbjct: 15 TAPTARARSTPSASPARPSLRLRRPSTLAAAAVQAEHQPAVAAAPKP 61
>04_03_0720 - 19008890-19009204,19009324-19009593
Length = 194
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +2
Query: 8 SSARRTESDPAASRAAPRVQRREAQGRVASPTEHR*DTPAAPEPE 142
SS DPAA AA G +A+ TE P PEPE
Sbjct: 15 SSGDAGAEDPAAVDAAEESGGEGGSGHIAAGTEAAPPRPPEPEPE 59
>01_06_1805 -
39999987-40000169,40000648-40000974,40001724-40002017,
40002112-40002231,40002714-40002776,40003150-40003310,
40003864-40004035
Length = 439
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 1/102 (0%)
Frame = +1
Query: 199 SPAAAATSWAGSRXRAPVPKQARTEPRTVTNYISPRDAMPSV-VYSRESLHPNSSSPVRS 375
SP A T + A Q P ++Y P+ A+ V+ P +++
Sbjct: 285 SPGAQQTYGTSQQVDASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPECQYYMKT 344
Query: 376 KRSDANLMCEISHPRWDLGPRSDRSPYPHSARFAVGPSLCRF 501
+C+ HPR P D P G LC+F
Sbjct: 345 GDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKF 386
>01_03_0301 - 14785898-14786299,14786785-14787234
Length = 283
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 148 ALFWLRRCWRILSMFRWRCDATLCLASLYS 59
A +W RR W +LS R R C+ +L S
Sbjct: 7 AAWWGRRAWELLSAVRARAPLVHCVTNLVS 36
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 518 NTINKPKRQSDGPTANRAECG*GLRSERG 432
+T R +G NR+ECG RSE G
Sbjct: 249 STTTSETRSEEGEMGNRSECGFAARSEYG 277
>05_02_0022 + 5682045-5682301,5682477-5682720
Length = 166
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/71 (35%), Positives = 33/71 (46%)
Frame = +2
Query: 11 SARRTESDPAASRAAPRVQRREAQGRVASPTEHR*DTPAAPEPE*RLDT*TTIRLSRASH 190
SARRT + P ASR P RR + R +SP P P+ RL TT R++
Sbjct: 7 SARRTSAPPTASRCHP--WRRRGRARRSSPPLLTFLFPIGLLPD-RLPRPTTPPFQRSAA 63
Query: 191 YAVHPQPQLRR 223
+ Q + RR
Sbjct: 64 TVILFQTRARR 74
>03_02_0816 + 11487811-11488708,11488835-11489235
Length = 432
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +1
Query: 229 GSRXRAPVPKQARTEPRTVTNYISPRDAMPSVVYSRESLHPNSSSPVRSKRSDANLMC 402
GSR P P +PR+ +Y SP + ++ R SSP +D L C
Sbjct: 224 GSRDVDPSPSPTPQKPRSEEHYPSPDSVLDAITSPRFPCR-KRSSPCTDLDADRKLSC 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,683,907
Number of Sequences: 37544
Number of extensions: 385429
Number of successful extensions: 1550
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -