Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060971.seq
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_52594| Best HMM Match : ShTK (HMM E-Value=1e-06)                    29   4.6  
SB_54446| Best HMM Match : PilO (HMM E-Value=2.9)                      28   6.1  
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_23551| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)                       28   8.0  
SB_19906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = +1

Query: 229 GSRXRAPVPKQARTEPRTVTNYIS--PRDAMPSVVYSRESLHPN-SSSPVRSKRSDANLM 399
           G+R   P P   R+E + +T++ +   RD  P VV S ES  P+ +  P R   S +   
Sbjct: 414 GARRSVPAPPPRRSESKLLTSFRTRGKRDT-PQVVSSYESSPPDPTQEPPRHVASKSWPS 472

Query: 400 CEISHPRWDLGPRSDRSPYP 459
             +       G  SDR  +P
Sbjct: 473 DHLGDNSRTSGTNSDRQSWP 492


>SB_52594| Best HMM Match : ShTK (HMM E-Value=1e-06)
          Length = 324

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 621 KHLNI*RPSLYNYYAETNNDVCYNEICIDSFQCMEHNQQAETAERWA 481
           +HLNI   +L+N   +T   V ++E C D+F         E  ERWA
Sbjct: 261 RHLNISADTLHNLAKQTPAKVYFSESCEDAF--------PEACERWA 299


>SB_54446| Best HMM Match : PilO (HMM E-Value=2.9)
          Length = 261

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = -2

Query: 672 KSAFLKSMPXRLVDXKLKHLNI*RPSLYNYYAETNNDVCYNEICIDSFQCMEHNQQAETA 493
           KS  LKS   RLVD  + H      +L     E   D    EI ++  +  E NQ++E  
Sbjct: 102 KSKMLKSRSKRLVDLGVPH------NLMELLPEDPEDAMPEEIIVELGRIREDNQKSEAE 155

Query: 492 ER 487
           +R
Sbjct: 156 KR 157


>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1208

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 307 DAMPSVVYSRESLHPNSSSPVRSKRSDANLMCEISHPRWD 426
           DA+  +  +R+S H  S   + +++SD        H RWD
Sbjct: 227 DAVRDIRSTRDSRHTGSLEKLANEKSDYGKQSRSEHGRWD 266


>SB_23551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +2

Query: 35  PAASRAAPRVQRREAQGRVASPTEHR*DTPAAPEPE*RLDT*TTIRLSRASH 190
           P  S++A R Q    Q + +S ++H  D+P   EPE R    + +R    SH
Sbjct: 233 PDVSQSASRNQSVRRQRKSSSDSDHNEDSPPRDEPETRDAWWSEVRNEIKSH 284


>SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -3

Query: 92  RRDPVPRVAVLEVQPETQQGRILFDELS 9
           R+D +P+VA+ + QP  Q+ R+ F +++
Sbjct: 432 RQDHIPQVAMWKSQPRGQKSRVAFADMA 459


>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 2538

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +1

Query: 175 VACVALRSSPAAAATSWAGSRXRAPVPKQARTEPRTVTNYISPRDAMPSVVYSRESLHP 351
           ++ + + +  A   + +  +  R P  K    +P  V    SP+  MPS  YS+E L+P
Sbjct: 401 ISQILIAAGYAVKTSEFNPNPLRIPAAKSTPPKPAPVQVQASPQ--MPSFSYSKEQLNP 457


>SB_19906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 259 QARTEPRTVTNYISPRDAMPSVVYSRESLHPNSSSPVRSKRSDANLMCEISH 414
           +    P T T ++ P  A   V+    S++  SSSP+RS+    +L  E  H
Sbjct: 321 ECTNNPNTPTIHVRPMSAAGEVI----SIYSRSSSPIRSQSVITSLQKESPH 368


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,086,721
Number of Sequences: 59808
Number of extensions: 418500
Number of successful extensions: 1302
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)