Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060971.seq
(682 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46343-6|CAL36520.1| 366|Caenorhabditis elegans Hypothetical pr... 32 0.33
Z46343-5|CAA86458.2| 356|Caenorhabditis elegans Hypothetical pr... 32 0.33
Z79695-7|CAO79774.1| 291|Caenorhabditis elegans Hypothetical pr... 31 0.76
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 30 1.3
U97193-9|AAL13319.1| 401|Caenorhabditis elegans Tropomodulin pr... 30 1.8
U97193-8|AAB52440.3| 392|Caenorhabditis elegans Tropomodulin pr... 30 1.8
AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical ... 30 1.8
Z81106-2|CAB03220.2| 468|Caenorhabditis elegans Hypothetical pr... 29 3.1
U52003-8|AAM97990.1| 441|Caenorhabditis elegans Hypothetical pr... 29 3.1
U52003-7|AAM97989.1| 555|Caenorhabditis elegans Hypothetical pr... 29 3.1
L25599-9|AAN63393.1| 683|Caenorhabditis elegans Aconitase prote... 29 3.1
L25599-8|AAL65788.1| 665|Caenorhabditis elegans Aconitase prote... 29 3.1
L25599-7|AAA28050.2| 777|Caenorhabditis elegans Aconitase prote... 29 3.1
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 29 4.1
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 29 4.1
Z80789-1|CAB02551.1| 708|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z79695-6|CAB01968.3| 293|Caenorhabditis elegans Hypothetical pr... 28 5.4
AC084155-6|AAK84607.1| 609|Caenorhabditis elegans Hypothetical ... 28 5.4
U39996-3|AAA81089.1| 621|Caenorhabditis elegans Hypothetical pr... 28 7.1
U39996-2|AAU20848.1| 607|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p... 27 9.4
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p... 27 9.4
>Z46343-6|CAL36520.1| 366|Caenorhabditis elegans Hypothetical
protein T23F11.3b protein.
Length = 366
Score = 32.3 bits (70), Expect = 0.33
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +1
Query: 229 GSRXRAPVPKQARTEPRTVTNYI-SPRDAMPSVVYSRESLHPNSSSPVRSKRSDANLMCE 405
G+ +P+P RT+ +V N++ SP D P+ R+S N+SS S ++ LM
Sbjct: 2 GANLTSPLPHHHRTQTTSVCNHLFSPGDGGPTFAPQRDS---NTSSRSSSNAKESVLMQG 58
Query: 406 ISHPRWDLGPRSDRSPYPHS 465
+ + ++ P R P S
Sbjct: 59 WNWSKRNIQPVMSRRSLPKS 78
>Z46343-5|CAA86458.2| 356|Caenorhabditis elegans Hypothetical
protein T23F11.3a protein.
Length = 356
Score = 32.3 bits (70), Expect = 0.33
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +1
Query: 229 GSRXRAPVPKQARTEPRTVTNYI-SPRDAMPSVVYSRESLHPNSSSPVRSKRSDANLMCE 405
G+ +P+P RT+ +V N++ SP D P+ R+S N+SS S ++ LM
Sbjct: 2 GANLTSPLPHHHRTQTTSVCNHLFSPGDGGPTFAPQRDS---NTSSRSSSNAKESVLMQG 58
Query: 406 ISHPRWDLGPRSDRSPYPHS 465
+ + ++ P R P S
Sbjct: 59 WNWSKRNIQPVMSRRSLPKS 78
>Z79695-7|CAO79774.1| 291|Caenorhabditis elegans Hypothetical
protein F27D4.2b protein.
Length = 291
Score = 31.1 bits (67), Expect = 0.76
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 145 ALRHLNYN*AVACVALRSSPAA-AATSWAGSRXRAPVPKQARTEPRTVT 288
A++H N A A S+P+ +TS A SR R P+ A PR T
Sbjct: 203 AMQHFNAQMAAAASVAVSTPSRNPSTSGAASRTRTPLTTSATNSPRPTT 251
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 30.3 bits (65), Expect = 1.3
Identities = 28/91 (30%), Positives = 39/91 (42%)
Frame = +2
Query: 2 GTSSARRTESDPAASRAAPRVQRREAQGRVASPTEHR*DTPAAPEPE*RLDT*TTIRLSR 181
G+++A T + PA +RA P + A R A P R PA+ P +T + S
Sbjct: 299 GSTAAPGTRAPPA-TRAPPATRAPPATTR-APPATTR-PAPASQPPVREPETPDSGYPSP 355
Query: 182 ASHYAVHPQPQLRRGLDPVXERPSPSKHAPN 274
A HP P P PSPS +P+
Sbjct: 356 APQEPAHPSPSYPSPSYPSPSYPSPSYPSPS 386
>U97193-9|AAL13319.1| 401|Caenorhabditis elegans Tropomodulin
protein 1, isoform b protein.
Length = 401
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 18 VEQNPTLLRLGLHLEYSDARHRVASHL 98
+E+N +LLR+G+ +ARHRV+ L
Sbjct: 357 IEENESLLRVGISFASMEARHRVSEAL 383
>U97193-8|AAB52440.3| 392|Caenorhabditis elegans Tropomodulin
protein 1, isoform a protein.
Length = 392
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 18 VEQNPTLLRLGLHLEYSDARHRVASHL 98
+E+N +LLR+G+ +ARHRV+ L
Sbjct: 348 IEENESLLRVGISFASMEARHRVSEAL 374
>AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical
protein C02B10.5 protein.
Length = 698
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 224 GLDPVXERPSPSKHAPNRAPLPTIYHHVM 310
G P P PS+ PN P +HH+M
Sbjct: 536 GASPSPHHPHPSQFPPNHPANPMYHHHIM 564
>Z81106-2|CAB03220.2| 468|Caenorhabditis elegans Hypothetical
protein R06C1.3 protein.
Length = 468
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +2
Query: 197 VHPQPQLRRGLDPVXERPSPSKHAPNRAPLPTIYHHVMP 313
VHP Q RG P R SP+ P AP P H+ P
Sbjct: 268 VHPSQQ--RGGAPAAARGSPNVKRPTEAPPPVNLDHLPP 304
>U52003-8|AAM97990.1| 441|Caenorhabditis elegans Hypothetical
protein ZK381.5b protein.
Length = 441
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 242 ERPSPSKHAPNRAPLPTIYHHVMPC 316
+RP P + AP P IY V+PC
Sbjct: 311 QRPKPPQRAPPPPPSENIYETVLPC 335
>U52003-7|AAM97989.1| 555|Caenorhabditis elegans Hypothetical
protein ZK381.5a protein.
Length = 555
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 242 ERPSPSKHAPNRAPLPTIYHHVMPC 316
+RP P + AP P IY V+PC
Sbjct: 425 QRPKPPQRAPPPPPSENIYETVLPC 449
>L25599-9|AAN63393.1| 683|Caenorhabditis elegans Aconitase protein
2, isoform c protein.
Length = 683
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Frame = -1
Query: 490 AMGQQRTEPNADKDYDL-NADRGPNGDE----KFHTLN*HLNACYEPDYSSWDAKTHENR 326
A G++ A K DL AD G N D+ TL H+N + PD +S K EN
Sbjct: 212 ATGRKEIAEEARKYKDLLTADDGANYDQIIEINLDTLTPHVNGPFTPDLASSIDKLGENA 271
Query: 325 LLKAW 311
W
Sbjct: 272 KKNGW 276
>L25599-8|AAL65788.1| 665|Caenorhabditis elegans Aconitase protein
2, isoform b protein.
Length = 665
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Frame = -1
Query: 490 AMGQQRTEPNADKDYDL-NADRGPNGDE----KFHTLN*HLNACYEPDYSSWDAKTHENR 326
A G++ A K DL AD G N D+ TL H+N + PD +S K EN
Sbjct: 194 ATGRKEIAEEARKYKDLLTADDGANYDQIIEINLDTLTPHVNGPFTPDLASSIDKLGENA 253
Query: 325 LLKAW 311
W
Sbjct: 254 KKNGW 258
>L25599-7|AAA28050.2| 777|Caenorhabditis elegans Aconitase protein
2, isoform a protein.
Length = 777
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Frame = -1
Query: 490 AMGQQRTEPNADKDYDL-NADRGPNGDE----KFHTLN*HLNACYEPDYSSWDAKTHENR 326
A G++ A K DL AD G N D+ TL H+N + PD +S K EN
Sbjct: 306 ATGRKEIAEEARKYKDLLTADDGANYDQIIEINLDTLTPHVNGPFTPDLASSIDKLGENA 365
Query: 325 LLKAW 311
W
Sbjct: 366 KKNGW 370
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 236 VXERPSPSKHAPNRAPLPTIYHHVM 310
V P+PS HA + P+P HH++
Sbjct: 2544 VPHSPAPSSHAESEQPVPESPHHIV 2568
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 236 VXERPSPSKHAPNRAPLPTIYHHVM 310
V P+PS HA + P+P HH++
Sbjct: 2544 VPHSPAPSSHAESEQPVPESPHHIV 2568
>Z80789-1|CAB02551.1| 708|Caenorhabditis elegans Hypothetical
protein F48C11.2 protein.
Length = 708
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 141 SGSGAAGVSYRCSVGDATRPCASRRCT 61
SGSG+A + +CS GD + A+ C+
Sbjct: 222 SGSGSATTTCKCSAGDVSATTAASACS 248
>Z79695-6|CAB01968.3| 293|Caenorhabditis elegans Hypothetical
protein F27D4.2a protein.
Length = 293
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 172 AVACVALRSSPAAAATSWAGSRXRAPVPKQARTEPRTVT 288
A A VA+ + +TS A SR R P+ A PR T
Sbjct: 215 AAASVAVSTPSRNPSTSGAASRTRTPLTTSATNSPRPTT 253
>AC084155-6|AAK84607.1| 609|Caenorhabditis elegans Hypothetical
protein Y45G5AM.8 protein.
Length = 609
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 235 RXRAPVPKQARTEPRTVTNYISPRDAMPSVVYSRESLHPNSSSPVRSKRSDA 390
R VP+ + EP V N ISPR P+++ + P S+P+ +DA
Sbjct: 477 REELEVPRLEQFEPMNV-NPISPRMDEPALLEENWNSKPTWSNPISENIADA 527
>U39996-3|AAA81089.1| 621|Caenorhabditis elegans Hypothetical
protein C56E6.3a protein.
Length = 621
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 246 ARPQASTHRTAHRYQLYI 299
A+P AS H+T+H QLY+
Sbjct: 353 AKPVASNHKTSHNEQLYL 370
>U39996-2|AAU20848.1| 607|Caenorhabditis elegans Hypothetical
protein C56E6.3b protein.
Length = 607
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 246 ARPQASTHRTAHRYQLYI 299
A+P AS H+T+H QLY+
Sbjct: 353 AKPVASNHKTSHNEQLYL 370
>Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical
protein F52H3.7a protein.
Length = 1245
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/88 (23%), Positives = 33/88 (37%)
Frame = +1
Query: 181 CVALRSSPAAAATSWAGSRXRAPVPKQARTEPRTVTNYISPRDAMPSVVYSRESLHPNSS 360
C+ S+PAAA + G QA P + +P + VV+ E N+S
Sbjct: 217 CIQEESAPAAAVSEEVGEAVHVVPVDQAPEAPTSEAQDAAPIEEHVEVVHVAE----NAS 272
Query: 361 SPVRSKRSDANLMCEISHPRWDLGPRSD 444
+P + + E P D P +
Sbjct: 273 TPAATDAHEETKSAEEQTPVVDASPAQE 300
>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +1
Query: 274 PRTVTNYISPRDAMPSVVY----SRESLHPNSSSPVRSKRS 384
P T + Y +PRD +PS + L+P +S+P+R +S
Sbjct: 5 PPTDSGYPTPRDEIPSTSRPNSPNNAQLYPLTSTPIRGNKS 45
>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +1
Query: 274 PRTVTNYISPRDAMPSVVY----SRESLHPNSSSPVRSKRS 384
P T + Y +PRD +PS + L+P +S+P+R +S
Sbjct: 5 PPTDSGYPTPRDEIPSTSRPNSPNNAQLYPLTSTPIRGNKS 45
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,453,558
Number of Sequences: 27780
Number of extensions: 302031
Number of successful extensions: 1139
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -