Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060971.seq
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25880.2 68417.m03722 pumilio/Puf RNA-binding domain-containi...    28   5.0  
At4g25880.1 68417.m03721 pumilio/Puf RNA-binding domain-containi...    28   5.0  
At3g09710.1 68416.m01150 calmodulin-binding family protein low s...    27   8.7  
At2g24620.1 68415.m02941 S-locus glycoprotein family protein con...    27   8.7  

>At4g25880.2 68417.m03722 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile:PF00806 Pumilio-family RNA
           binding domains
          Length = 852

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 230 DPVXERPSPSKHAPNRAPLPTIYH 301
           +PV   PS SKH+ NR P P IY+
Sbjct: 66  EPVTTHPS-SKHSLNRIPSPPIYY 88


>At4g25880.1 68417.m03721 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile:PF00806 Pumilio-family RNA
           binding domains
          Length = 861

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 230 DPVXERPSPSKHAPNRAPLPTIYH 301
           +PV   PS SKH+ NR P P IY+
Sbjct: 66  EPVTTHPS-SKHSLNRIPSPPIYY 88


>At3g09710.1 68416.m01150 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 454

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/68 (22%), Positives = 35/68 (51%)
 Frame = +1

Query: 196 SSPAAAATSWAGSRXRAPVPKQARTEPRTVTNYISPRDAMPSVVYSRESLHPNSSSPVRS 375
           ++P+A++T+    R + P+P   +++        S R+  PS+  +R S+  + +    +
Sbjct: 318 NTPSASSTATRNPRKKRPIPSSIKSKSSDDEAKSSERNRRPSI--ARPSVSDDETLSSST 375

Query: 376 KRSDANLM 399
            R  +NL+
Sbjct: 376 ARRSSNLI 383


>At2g24620.1 68415.m02941 S-locus glycoprotein family protein
           contains Pfam profile: PF00954 S-locus glycoprotein
           family
          Length = 157

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -1

Query: 352 WDAKTHENRLLKAW 311
           WDAK++ NR+LK+W
Sbjct: 5   WDAKSNINRVLKSW 18


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,548,976
Number of Sequences: 28952
Number of extensions: 276321
Number of successful extensions: 858
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)