Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060970.seq
         (680 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            23   2.3  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   2.3  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   7.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   7.1  
AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    21   7.1  

>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 451 FSCIKTKSKNPEAPRGG 401
           F  +KT+S +PEA  GG
Sbjct: 19  FVVVKTRSNSPEAGGGG 35


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 451 FSCIKTKSKNPEAPRGG 401
           F  +KT+S +PEA  GG
Sbjct: 19  FVVVKTRSNSPEAGGGG 35


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 152 RRFRYRLARTVASPRTTSLSIRHSDV 75
           RR+R+R+  + AS     L+I+  D+
Sbjct: 342 RRYRFRMINSFASVCPAQLTIQGHDL 367


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 152 RRFRYRLARTVASPRTTSLSIRHSDV 75
           RR+R+R+  + AS     L+I+  D+
Sbjct: 342 RRYRFRMINSFASVCPAQLTIQGHDL 367


>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 59  SLINYEHRYV*SREKSFEDSQRFSR 133
           S ++ EH YV  R   F DS + S+
Sbjct: 33  SFVHKEHCYVLVRLARFRDSVKLSK 57


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,878
Number of Sequences: 336
Number of extensions: 2217
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)