Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060970.seq
(680 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 48 9e-07
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 44 2e-05
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 39 6e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 39 6e-04
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 38 0.002
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.003
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 37 0.003
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 37 0.003
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 37 0.003
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 35 0.009
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 34 0.017
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 34 0.017
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 34 0.022
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 33 0.038
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 33 0.038
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 33 0.038
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 32 0.067
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 31 0.12
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.20
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 30 0.36
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 30 0.36
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 29 0.62
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 29 0.62
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 1.4
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 1.9
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 26 4.4
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 25 7.7
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 48.4 bits (110), Expect = 9e-07
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +2
Query: 380 VRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFV-YF 556
+R L+ S C+ V LS YTTE+QI +FSK G + ++ + + T GFCFV YF
Sbjct: 22 LRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYF 81
Query: 557 EDME 568
E+ +
Sbjct: 82 ENQD 85
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 44.0 bits (99), Expect = 2e-05
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +2
Query: 404 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
P + + + LS T E I F++YGP+++++ + TG+S G+ FV FE D K
Sbjct: 98 PYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLK 155
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 39.1 bits (87), Expect = 6e-04
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
V G+ TE+Q+ +F+ +GPV + L +RTG +G+ + + +E A+
Sbjct: 14 VTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQ 65
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 39.1 bits (87), Expect = 6e-04
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +2
Query: 407 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
S L V LS T E+++ +F ++G + +V + TGR++GF FV + D + A
Sbjct: 201 SATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCA 256
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +2
Query: 404 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDME 568
PS L V L TT+ + F + G + +V+ + TG+ +GF FV F D++
Sbjct: 226 PSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDID 280
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
L V L+ T + + + FS GP+ TG +RG+ FV F +EDA+
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQ 60
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 452 QQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
Q + FSK+G V +++ + GR GF FV+ +D + A+
Sbjct: 122 QHLEPHFSKFGKVREIKIPT-KGGGRMCGFAFVWMKDRKAAE 162
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 446 TEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
TEQ++ + F ++GP+ + T RS G F+ F +D +
Sbjct: 289 TEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQ 332
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/61 (29%), Positives = 36/61 (59%)
Frame = +2
Query: 395 NPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
N + L + LS T +++ +F +YGPV +++ + T ++RG FV +E+++DA
Sbjct: 7 NQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIR---LGNTVQTRGTAFVVYENVQDA 63
Query: 575 K 577
+
Sbjct: 64 R 64
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 404 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
PS + V LS TE ++ F G + ++ ++GR +GF +V F D++ AK
Sbjct: 364 PSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAK 421
Score = 31.9 bits (69), Expect = 0.088
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 431 LSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
LS +Q + F +YG + + + ++GRS+G+ +V FE E AK
Sbjct: 270 LSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAK 318
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
L V G++ E ++ IFSK+G V V+ T SRGF F+ F +E+A
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEA 155
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 35.1 bits (77), Expect = 0.009
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
E+Q+ FS++GPV +++ ++TG S+ + F+ FE ++ A
Sbjct: 118 EKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVA 159
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 34.3 bits (75), Expect = 0.017
Identities = 14/69 (20%), Positives = 37/69 (53%)
Frame = +2
Query: 368 LGDRVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCF 547
+ ++ R ++ + ++ L + L+ E + +F +G +++V + ++T +GF +
Sbjct: 309 VSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAY 368
Query: 548 VYFEDMEDA 574
+ F D +DA
Sbjct: 369 IDFHDADDA 377
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 34.3 bits (75), Expect = 0.017
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 446 TEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDME 568
+EQQ+ IF++ GPV + L TG +G+ F F D E
Sbjct: 19 SEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSE 59
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 33.9 bits (74), Expect = 0.022
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +2
Query: 398 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
PT S L V L TE + +F+ GPV ++ T RS G+ +V F +MED +
Sbjct: 77 PT-SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGE 135
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 33.1 bits (72), Expect = 0.038
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +2
Query: 377 RVRLLENPTPS---RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCF 547
RV + +P P RC+ V L+ E+ + F G +D V+ +T +GF +
Sbjct: 256 RVDSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAY 315
Query: 548 VYFED 562
+ F+D
Sbjct: 316 IQFKD 320
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.1 bits (72), Expect = 0.038
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +2
Query: 407 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
S C+ V L T+++ + +F+ G V + + + TGRS+GF V FE+ DA
Sbjct: 279 SDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAY-EPTGRSKGFGVVQFENENDA 333
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 33.1 bits (72), Expect = 0.038
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
V L E+ + +F + P+ + R GRS G C VYFE +DA+
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPIRVIMNY--DRAGRSEGSCDVYFETSQDAE 138
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 32.3 bits (70), Expect = 0.067
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 428 GLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
GL+ TT+ + F ++G V TGRSRGF F+ F++
Sbjct: 169 GLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKN 213
Score = 32.3 bits (70), Expect = 0.067
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 446 TEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
TE++ + F+++G V + + TGR RGF FV +E+
Sbjct: 259 TEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN 297
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 31.5 bits (68), Expect = 0.12
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 449 EQQINHIFSKYG-PVDKVQXXLMQRTGRSRGFCFVYFED 562
E I +FS++G PVD + + TG+S+GF F+ +ED
Sbjct: 44 EDDILCVFSEFGEPVD-INLVRDKETGKSKGFAFLKYED 81
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 30.7 bits (66), Expect = 0.20
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 404 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
PS + V + E+Q+ IF + GPV Q + +G+ +G+ F + D
Sbjct: 3 PSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHD 55
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 29.9 bits (64), Expect = 0.36
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
+ L L E Q+ + +G + Q G S+GFCF F++ DA+
Sbjct: 314 ISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAE 365
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 29.9 bits (64), Expect = 0.36
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 410 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
R L V G +++ + F +GP+ + + RT SR F FV +ED DA+
Sbjct: 7 RTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPI-PRTRTSRPFAFVEYEDSRDAE 61
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 29.1 bits (62), Expect = 0.62
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 434 SLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAKXXK 586
++ T + Q+ +FS +G + +G S+G+ FV F +E A K
Sbjct: 392 TVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAK 442
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 29.1 bits (62), Expect = 0.62
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 383 RLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYF 556
+L E R + V L+ T +++ F + GPV Q + +GRS+G +V F
Sbjct: 231 KLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF 288
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDME 568
++ + FS+Y + K + + R G++RGF FV F+D +
Sbjct: 43 DESLYQAFSEYPSLVKTKV-VRDREGKTRGFGFVSFKDSD 81
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.5 bits (58), Expect = 1.9
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Frame = +2
Query: 398 PTPSRCLGVFGLSLYTTEQQINHIFSKYGP------VDKVQXXLMQR------TGRSRGF 541
P P + V GLS+ T + + +F Y P V + +++R R RGF
Sbjct: 201 PLPPNSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGF 260
Query: 542 CFVYFEDMED 571
FV F + ED
Sbjct: 261 GFVSFANAED 270
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 452 QQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYF 556
QQ+ +FSK+G + T S+G+ FV F
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSF 469
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 195 AASWTGXDYVLWTSPQVSVP 136
AA W G +Y LW++ S+P
Sbjct: 663 AAHWLGDNYSLWSNMIFSIP 682
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,901
Number of Sequences: 5004
Number of extensions: 36308
Number of successful extensions: 108
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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