Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060970.seq
(680 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) 51 8e-07
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 45 7e-05
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 41 0.001
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 38 0.006
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 37 0.017
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 36 0.040
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 35 0.053
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.070
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.070
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.093
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 33 0.16
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 33 0.28
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 33 0.28
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 32 0.37
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 31 0.86
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 31 0.86
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 31 1.1
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 29 2.6
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 29 3.5
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 29 3.5
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 29 4.6
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 29 4.6
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 28 8.0
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
Length = 694
Score = 51.2 bits (117), Expect = 8e-07
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = +2
Query: 413 CLGVFGLSLYTTEQQINHIFSKYGPVDKVQ 502
CLGVFGLSLYTTE+ + +F KYGPV+ +Q
Sbjct: 182 CLGVFGLSLYTTERDLRPVFEKYGPVEAIQ 211
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
V GL TTE ++ F+++G +D + L T RSRGF FV F+ EDAK
Sbjct: 119 VLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAK 170
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 44.8 bits (101), Expect = 7e-05
Identities = 23/53 (43%), Positives = 30/53 (56%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
L V GLS TT++ + FSKYG + V + TGR RGF FV F+ +A
Sbjct: 31 LFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEA 83
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSK-YGPVDKVQXXLMQRTGRSRGFCFVYFEDMED 571
V GL T++++I F K Y PV +++ + R RGFCFV F D ED
Sbjct: 107 VGGLKPETSDEKIREYFGKAYAPVKEIEYITEHSSNRRRGFCFVSF-DSED 156
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/53 (39%), Positives = 33/53 (62%)
Frame = +2
Query: 410 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDME 568
R + + GL+ TTE+ + FS++G + V +M+R GRSRGF FV +E +
Sbjct: 50 RKIFIGGLNWNTTEEGLKDYFSQWGTI--VDCVIMKRDGRSRGFGFVTYESSD 100
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
L V L+ TT + + +F KYG + + + T SRGF FV F + DA+
Sbjct: 18 LKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAE 71
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +2
Query: 404 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
P L V L+ TT++ + IFS++G + + Q+TG S + F+ FE ED +
Sbjct: 118 PDNVLFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCE 175
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +2
Query: 410 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
R + V + +E+Q+ IFS+ GPV + + TG+ +G+ F ++D E A
Sbjct: 25 RSVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETA 79
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 35.5 bits (78), Expect = 0.040
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V LS T E + +F GP+ ++ + T +S+GF F+ F EDA
Sbjct: 185 VTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDA 235
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 35.1 bits (77), Expect = 0.053
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +2
Query: 407 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
S+ + V G + TTE ++ F +YG V K + + G S+G+ F+ FE E A
Sbjct: 7 SKRIFVKGFNRETTESELRAFFEEYGVV-KESKIVRDKHGVSKGYAFITFESQEVA 61
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 34.7 bits (76), Expect = 0.070
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +2
Query: 395 NPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
N P L V GL+ TT + + F YG + V T +SRGF +V F D
Sbjct: 9 NNDPRAKLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFAD 64
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 34.7 bits (76), Expect = 0.070
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 395 NPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
+P L V + E I+ +FS YG + + L +RTG +G+ V +E ++A
Sbjct: 288 HPVEGWILFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEA 347
Query: 575 K 577
+
Sbjct: 348 Q 348
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 34.3 bits (75), Expect = 0.093
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +2
Query: 404 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAKXX 583
P L V L TE Q + S YG ++++ + TG S+G+ FV + E+A
Sbjct: 111 PESLLFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYATRENAMQA 170
Query: 584 K 586
K
Sbjct: 171 K 171
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 458 INHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
I +FS+ G V Q + G SRGF FV + E+A+
Sbjct: 222 IKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAE 261
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 404 PSRCLGVFGLSLYT-TEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
PS+ G Y+ T ++ +F +YG V KV + T SRG F+ F D + A+
Sbjct: 7 PSKSTVYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQ 65
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 33.5 bits (73), Expect = 0.16
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 383 RLLENPTPSRC-LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFE 559
R +PTP L V L+ + + IFS YG V V + SRGF +V +
Sbjct: 1147 RRKRSPTPKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYV 1206
Query: 560 DMEDAK 577
D E+ +
Sbjct: 1207 DPEECE 1212
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 32.7 bits (71), Expect = 0.28
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 392 ENPTPSRCLGVF--GLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDM 565
+ P P R VF + E ++ +F GP+ +V+ +M G++RG+ FV +
Sbjct: 66 DRPIPPRGCEVFVGKIPRDLYEDELVPVFETAGPIYEVRL-MMDFNGQNRGYAFVVYTSK 124
Query: 566 EDAK 577
+DAK
Sbjct: 125 DDAK 128
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
E+ ++ IF KYG + V L R G F FV FED DA+
Sbjct: 274 EKDLHDIFYKYGHIADVD--LKNRRGAGPPFAFVEFEDPRDAE 314
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +2
Query: 410 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDME 568
R L + L+ + E +I F ++G V+KV + +GRSRGF FV + +
Sbjct: 9 RKLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSAD 60
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +2
Query: 428 GLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYF 556
GLS TE + +F+K+GPV V L +G+SR FV+F
Sbjct: 530 GLSEDVTENVLLELFNKFGPVKDV-VILRDESGKSRQSGFVHF 571
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +2
Query: 368 LGDRVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCF 547
L D+ L V L E +I +FSK+G V +V+ + R G+ +G+ +
Sbjct: 157 LRDKFSKFPTSLDKHTLFVSNLPFDAKESEIEELFSKHGVVKQVR-LVTNRAGKPKGYGY 215
Query: 548 VYFEDMEDA 574
V +E A
Sbjct: 216 VEYEQESSA 224
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 31.1 bits (67), Expect = 0.86
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 404 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
P L V+ + ++ I +F + G V+KV + + +GFCFV E+A+
Sbjct: 273 PGCTLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQ 330
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 31.1 bits (67), Expect = 0.86
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 479 YGPVDKVQXXLMQRTGRSRGFCFVYFED 562
YG + V ++TG+ +GFCF+ +ED
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYED 29
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 31.1 bits (67), Expect = 0.86
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
+ + +F YG ++ + Q TG+S+GF +V +E+ E A+
Sbjct: 76 KSSLESVFGPYGAIEDLSIIRTQ-TGKSKGFGYVTYENAESAQ 117
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 31.1 bits (67), Expect = 0.86
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 479 YGPVDKVQXXLMQRTGRSRGFCFVYFED 562
YG + V ++TG+ +GFCF+ +ED
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYED 29
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 31.1 bits (67), Expect = 0.86
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +2
Query: 389 LENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLM---QRTGRSRGFCFVYFE 559
+++ R L + L +E I I ++G ++ Q G RG+CFV F+
Sbjct: 380 IDDAVSERKLWIGNLDKRLSEFNILKILQQFGEIEHFQFLFHGNGPNRGEPRGYCFVEFK 439
Query: 560 DMEDAK 577
EDA+
Sbjct: 440 KKEDAR 445
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 431 LSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
L + + +FS++G V V + G +GF F+ FE + A+
Sbjct: 95 LPFHADHDWLKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQQAE 143
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = +2
Query: 392 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMED 571
+NP P+ L V LS TT + F + + +G SRGF FV ++D+E
Sbjct: 284 QNP-PNSSLIVRNLSYDTTTDSLGAAFEG---CSNAKVIFDRESGESRGFGFVDYDDVET 339
Query: 572 AK 577
AK
Sbjct: 340 AK 341
>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1182
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 443 TTEQQINHIFSKYGPVDKVQXXLMQRTGRSRG 538
TTE ++ FS +GPV V+ +RTG ++G
Sbjct: 1077 TTELELETFFSNFGPVADVRIVCDRRTGLNKG 1108
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 446 TEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMED 571
T++ + F+KY K + +++ +S+G+ FV F+D D
Sbjct: 229 TDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDPND 270
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 446 TEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
+++ I IF G V + + TG+S G+ FV +++ +DA
Sbjct: 39 SQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDA 81
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDME 568
E+ + +F+ G V+ V+ ++TG +GF +V FE +
Sbjct: 69 EEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKD 108
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKY--GPVDKVQXXLMQRT--GRSRGFCFVYFEDMED 571
L V GL+ TTE+ + F + G V + +T G+SR FCFV F + D
Sbjct: 10 LFVGGLNEDTTEETVRAYFKSFCEGSEADVSSVSLAKTPEGKSRKFCFVEFSNGSD 65
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFE 559
L + GL TT+ + + KYG + + L + T +G+ FV FE
Sbjct: 102 LYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFE 149
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V + L +E Q+ +F+KYG ++KV+ + R + FVYF E A
Sbjct: 6 VRNVPLPMSETQLKAVFTKYGQIEKVR--------KIRDYGFVYFAKRESA 48
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +2
Query: 410 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRG 538
R L V LS T E + F YG V KV + TG+S+G
Sbjct: 319 RTLFVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGKSKG 361
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 27.9 bits (59), Expect = 8.0
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 410 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYF---EDMEDA 574
RC + LS EQ + F VD V+ + TGR RGF FV F E+ME A
Sbjct: 6 RCY-IGNLSYSVDEQALEEKFHGCDVVD-VKVITDRETGRPRGFGFVTFGSKEEMEKA 61
>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 485 PVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
P+ ++ + TG SRGFCFV +E+A
Sbjct: 435 PIYDIRLIKDKVTGTSRGFCFVELATIEEA 464
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,470,465
Number of Sequences: 59808
Number of extensions: 312077
Number of successful extensions: 637
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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