Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060970.seq
(680 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 71 6e-13
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 41 0.001
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 41 0.001
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 41 0.001
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 39 0.003
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 39 0.004
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 39 0.004
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 39 0.004
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 39 0.004
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 39 0.004
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 38 0.007
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 38 0.009
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 38 0.009
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 37 0.015
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 37 0.015
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 37 0.015
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 37 0.015
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 37 0.015
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 36 0.020
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 36 0.020
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 36 0.027
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 35 0.062
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 34 0.082
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 34 0.082
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 34 0.11
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 34 0.11
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 34 0.11
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 33 0.14
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 33 0.14
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 33 0.19
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 33 0.19
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 33 0.25
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 32 0.33
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 31 0.58
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 31 0.58
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 29 2.3
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 29 2.3
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 29 2.3
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 29 2.3
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 29 2.3
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 29 2.3
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 29 2.3
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 29 2.3
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 29 2.3
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 29 3.1
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 29 3.1
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 29 3.1
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 29 3.1
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 29 3.1
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 28 5.4
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 28 5.4
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 28 5.4
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 28 5.4
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 28 5.4
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 28 5.4
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 28 5.4
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 27 9.4
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ... 27 9.4
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 27 9.4
AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical ... 27 9.4
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 71.3 bits (167), Expect = 6e-13
Identities = 30/61 (49%), Positives = 42/61 (68%)
Frame = +2
Query: 392 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMED 571
ENP PS+CLGVF LS YTTE+ + +F ++G ++K + +G SRGF F+YF +ED
Sbjct: 70 ENPQPSKCLGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIED 129
Query: 572 A 574
A
Sbjct: 130 A 130
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/95 (30%), Positives = 43/95 (45%)
Frame = +2
Query: 392 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMED 571
++P R L + GLS TT++Q+ + FS++GPV T SRGF FV F +
Sbjct: 43 DSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFS 102
Query: 572 AKXXKX*MPPEWXLTVLASASXYSITQXASHFPLP 676
A+ P + + S Q +S P P
Sbjct: 103 AESAMNDRPHKLGGKTVDSKRAIPREQMSSMIPPP 137
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/95 (30%), Positives = 43/95 (45%)
Frame = +2
Query: 392 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMED 571
++P R L + GLS TT++Q+ + FS++GPV T SRGF FV F +
Sbjct: 63 DSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFS 122
Query: 572 AKXXKX*MPPEWXLTVLASASXYSITQXASHFPLP 676
A+ P + + S Q +S P P
Sbjct: 123 AESAMNDRPHKLGGKTVDSKRAIPREQMSSMIPPP 157
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/95 (30%), Positives = 43/95 (45%)
Frame = +2
Query: 392 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMED 571
++P R L + GLS TT++Q+ + FS++GPV T SRGF FV F +
Sbjct: 64 DSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFS 123
Query: 572 AKXXKX*MPPEWXLTVLASASXYSITQXASHFPLP 676
A+ P + + S Q +S P P
Sbjct: 124 AESAMNDRPHKLGGKTVDSKRAIPREQMSSMIPPP 158
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 443 TTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
TTE+++ + FS G ++ V+ + TGR RGF F+ F + A+
Sbjct: 16 TTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQ 60
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +2
Query: 392 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
E+ ++ L V G+ TE + F+KYG V K + L + T + RGF FV F+D
Sbjct: 108 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
Score = 32.3 bits (70), Expect = 0.33
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +2
Query: 398 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYF 556
P R + V GL+ TT+ + +S++G + + T RSRGF FV F
Sbjct: 19 PENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +2
Query: 392 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
E+ ++ L V G+ TE + F+KYG V K + L + T + RGF FV F+D
Sbjct: 70 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 126
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +2
Query: 392 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
E+ ++ L V G+ TE + F+KYG V K + L + T + RGF FV F+D
Sbjct: 70 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 126
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +2
Query: 392 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
E+ ++ L V G+ TE + F+KYG V K + L + T + RGF FV F+D
Sbjct: 108 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
Score = 32.3 bits (70), Expect = 0.33
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +2
Query: 398 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYF 556
P R + V GL+ TT+ + +S++G + + T RSRGF FV F
Sbjct: 19 PENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +2
Query: 392 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
E+ ++ L V G+ TE + F+KYG V K + L + T + RGF FV F+D
Sbjct: 108 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
Score = 32.3 bits (70), Expect = 0.33
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +2
Query: 398 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYF 556
P R + V GL+ TT+ + +S++G + + T RSRGF FV F
Sbjct: 19 PENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 37.9 bits (84), Expect = 0.007
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 380 VRLLENPTPSRC-LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYF 556
VR E + C L V LS YT E Q+ +F + G V +V L + GFCFV +
Sbjct: 26 VRDQETALRTSCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEY 85
Query: 557 EDMEDAK 577
EDA+
Sbjct: 86 YTREDAE 92
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +2
Query: 377 RVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYF 556
++ L R L + ++ T + + FS G V V+ RTGRS+G C+V F
Sbjct: 14 KLELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEF 73
Query: 557 EDME 568
D E
Sbjct: 74 WDEE 77
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +2
Query: 377 RVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYF 556
++ L R L + ++ T + + FS G V V+ RTGRS+G C+V F
Sbjct: 159 KLELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEF 218
Query: 557 EDME 568
D E
Sbjct: 219 WDEE 222
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 443 TTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
TTE + + FS+ G V V+ + TGR RGF FV F +
Sbjct: 15 TTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTE 54
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +2
Query: 446 TEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
TE++I + F+ G V+ V+ + TGR RGF FV F + A+
Sbjct: 18 TEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQ 61
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 36.7 bits (81), Expect = 0.015
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +2
Query: 398 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
P +R L + L T +++ IF K+G V +++ + T +RG FV +ED+ DAK
Sbjct: 15 PEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIR---VGNTAETRGTAFVVYEDIFDAK 71
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
V G+S + ++ F++YG V + Q + GRSRGF FV F E K
Sbjct: 33 VGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCK 84
Score = 35.5 bits (78), Expect = 0.035
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V GL +EQ + F ++G VD ++ ++T R F F+ FE+ E A
Sbjct: 114 VGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESA 164
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
V G+S + ++ F++YG V + Q + GRSRGF FV F E K
Sbjct: 33 VGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCK 84
Score = 35.5 bits (78), Expect = 0.035
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V GL +EQ + F ++G VD ++ ++T R F F+ FE+ E A
Sbjct: 114 VGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESA 164
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 36.3 bits (80), Expect = 0.020
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 443 TTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYF 556
T E + +F KYG V +VQ + ++TG +GF V F
Sbjct: 290 TKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEF 327
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 446 TEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
TEQQ+ F KYG + + G+ RGF FV F D
Sbjct: 15 TEQQLRKFFEKYGQISDASLK-YTKEGKFRGFAFVGFLD 52
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 36.3 bits (80), Expect = 0.020
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 428 GLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
GLS +E + +FS+YG V + + TG+S+GF F+ ++D
Sbjct: 44 GLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKD 88
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 35.9 bits (79), Expect = 0.027
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +2
Query: 395 NPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
N R + V +S +E I IFSK G V ++ + TG+ +G+ F+ F D++ A
Sbjct: 13 NDRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTA 72
Query: 575 K 577
+
Sbjct: 73 E 73
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 34.7 bits (76), Expect = 0.062
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 446 TEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
TE ++ FS+YG + + L +RTG +G+ V +E ++A
Sbjct: 67 TEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEA 109
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 34.3 bits (75), Expect = 0.082
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +2
Query: 401 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
T ++ + + GLS +T + + F YG V+ + T R RGF FV F+ E A
Sbjct: 131 TKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVA 188
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 428 GLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
GLS TT + + F ++G V++ T R+RGF F+ F D
Sbjct: 51 GLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVD 95
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 34.3 bits (75), Expect = 0.082
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +2
Query: 401 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
T ++ + + GLS +T + + F YG V+ + T R RGF FV F+ E A
Sbjct: 131 TKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVA 188
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 428 GLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
GLS TT + + F ++G V++ T R+RGF F+ F D
Sbjct: 51 GLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVD 95
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +2
Query: 404 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
P L V L+ TT++ + IFS++G ++ + +R+G S + F+ F++ + +
Sbjct: 239 PENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCE 296
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +2
Query: 404 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
P L V L+ TT++ + IFS++G ++ + +R+G S + F+ F++ + +
Sbjct: 239 PENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCE 296
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +2
Query: 404 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
P L V L+ TT++ + IFS++G ++ + +R+G S + F+ F++ + +
Sbjct: 170 PENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCE 227
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
L + LS TT + F +YG + V + + +S+GF FV F + DA+
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAE 74
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
L + LS TT + F +YG + V + + +S+GF FV F + DA+
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAE 74
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
E+++ IF KYG + V ++GR F FV FED DA+
Sbjct: 22 EKEVEDIFHKYGRIKYVDI----KSGRGPAFAFVEFEDHRDAE 60
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
E+++ IF KYG + V ++GR F FV FED DA+
Sbjct: 22 EKEVEDIFHKYGRIKYVDI----KSGRGPAFAFVEFEDHRDAE 60
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 443 TTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
T + Q+ H F +YG + V TG RGF + F+ + A
Sbjct: 36 TGKSQLEHYFKRYGSIQSVNMFYDPDTGLHRGFASITFDSKDGA 79
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 410 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
R L V G + TE+ + F +G V + + +G+ RGF FV F+ EDA
Sbjct: 11 RTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDA 65
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 32.7 bits (71), Expect = 0.25
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +2
Query: 371 GDRVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFV 550
GD+ P S L + GL T + + + SKYG + + + + T +G+ FV
Sbjct: 68 GDQQHHDSTPLSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFV 127
Query: 551 YFEDMEDA 574
FE + A
Sbjct: 128 DFESPQAA 135
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
E ++ +F K G V ++ + TG +GF FV FE +DA
Sbjct: 189 EDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDA 230
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 31.5 bits (68), Expect = 0.58
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 392 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYF 556
E+ T + + + LS T E+ I SK+G +D + +G S+G FV+F
Sbjct: 257 ESITEGKVVFLRNLSYDTKEELIKEELSKFGKIDLAIICKYKDSGHSKGTAFVHF 311
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 446 TEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMED 571
+++ + F KY K + RT +S+G+ FV F D ED
Sbjct: 215 SDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSED 256
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 470 FSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
FS +G + + ++ GRS+GF FV FE E+A
Sbjct: 363 FSSFGTITSAKV-MVDENGRSKGFGFVCFEKPEEA 396
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 470 FSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
FS +G + + ++ GRS+GF FV FE E+A
Sbjct: 363 FSSFGTITSAKV-MVDENGRSKGFGFVCFEKPEEA 396
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +2
Query: 431 LSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAKXXKX*MPPEW 607
LS + + + F+K+G V + + +T +S+G+ FV F + ++A+ M +W
Sbjct: 142 LSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKW 200
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFS-KYGPVDKVQXXLMQRTGRSRGFCFVYFE 559
V L TE + FS + GPV+ V+ + TG+ +GF FV F+
Sbjct: 250 VGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFK 296
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
E +F KYG V + T S+G CFV F +DA
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDA 109
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
E +F KYG V + T S+G CFV F +DA
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDA 109
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
++ + +F+K+G + + +M G+S+GF FV F + E+A+
Sbjct: 226 KETLEKVFAKFGNITSCE--VMTVEGKSKGFGFVAFANPEEAE 266
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 470 FSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
F YG + + + GRS+GF FV FE E+A
Sbjct: 337 FESYGNITSAKV-MTDENGRSKGFGFVCFEKPEEA 370
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
E +F KYG V + T S+G CFV F +DA
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDA 109
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
E +F KYG V + T S+G CFV F +DA
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDA 109
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
E +F KYG V + T S+G CFV F +DA
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDA 109
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
E +F KYG V + T S+G CFV F +DA
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDA 109
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
E +F KYG V + T S+G CFV F +DA
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDA 109
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 446 TEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
T+ ++ +FSK+G V V+ + + G+ +G FV F+ A+
Sbjct: 695 TDDELKALFSKFGTVTSVR-RVTHKDGKPKGIAFVDFDTEASAQ 737
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +2
Query: 446 TEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
T++++ +F+ G ++ + + TG+S G+ FV + EDA
Sbjct: 54 TQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDA 96
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
++ + +F+K+G + + +M G+S+GF FV F + E+A+
Sbjct: 166 KETLEKLFAKFGNITSCE--VMTVEGKSKGFGFVAFANPEEAE 206
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 470 FSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
F YG + + + GRS+GF FV FE E+A
Sbjct: 277 FESYGNITSAKV-MTDENGRSKGFGFVCFEKPEEA 310
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
++ + +F+K+G + + +M G+S+GF FV F + E+A+
Sbjct: 163 KETLEKLFAKFGNITSCE--VMTVEGKSKGFGFVAFANPEEAE 203
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 470 FSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
F YG + + + GRS+GF FV FE E+A
Sbjct: 274 FESYGNITSAKV-MTDENGRSKGFGFVCFEKPEEA 307
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
++ + +F+K+G + + +M G+S+GF FV F + E+A+
Sbjct: 226 KETLEKLFAKFGNITSCE--VMTVEGKSKGFGFVAFANPEEAE 266
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 470 FSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
F YG + + + GRS+GF FV FE E+A
Sbjct: 337 FESYGNITSAKV-MTDENGRSKGFGFVCFEKPEEA 370
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +2
Query: 431 LSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAKXXKX*MPPEW 607
LS Q++ F +G V + T +S+G+ FV + E+A+ M +W
Sbjct: 29 LSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQW 87
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +2
Query: 431 LSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAKXXKX*MPPEW 607
LS Q++ F +G V + T +S+G+ FV + E+A+ M +W
Sbjct: 39 LSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQW 97
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +2
Query: 431 LSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAKXXKX*MPPEW 607
LS Q++ F +G V + T +S+G+ FV + E+A+ M +W
Sbjct: 142 LSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQW 200
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +2
Query: 431 LSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAKXXKX*MPPEW 607
LS Q++ F +G V + T +S+G+ FV + E+A+ M +W
Sbjct: 110 LSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQW 168
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V +S E + F +GP+ + TG + F FV +E E A
Sbjct: 106 VGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAA 156
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V +S E + F +GP+ + TG + F FV +E E A
Sbjct: 106 VGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAA 156
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V +S E + F +GP+ + TG + F FV +E E A
Sbjct: 106 VGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAA 156
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
E + +F K G + ++ + +G SRG+ FV + + EDA
Sbjct: 213 EDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDA 254
>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
protein Y79H2A.3a protein.
Length = 2129
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 93 RERSRSRTRNGSREPVPKPAVMSR 164
R R++SR+R+ SRE P P SR
Sbjct: 1560 RSRTKSRSRSRSREAAPPPQQRSR 1583
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Frame = +2
Query: 398 PTPSRCLGVF--GLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMED 571
P SR VF L ++ F K+G V + + T + +G+ FV + ED
Sbjct: 126 PETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRRED 185
Query: 572 AKXXKX*MPPEW 607
A+ M W
Sbjct: 186 AERAIDEMNGAW 197
>AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical
protein C51G7.3 protein.
Length = 754
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 93 RERSRSRTRNGSREPVPKPAVMSR 164
R R++SR+R+ SRE P P SR
Sbjct: 185 RSRTKSRSRSRSREAAPPPQQRSR 208
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,620,862
Number of Sequences: 27780
Number of extensions: 214291
Number of successful extensions: 533
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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