Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060970.seq
(680 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 47 1e-05
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 45 4e-05
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 44 7e-05
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 44 1e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 43 2e-04
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 43 2e-04
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 42 3e-04
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 42 4e-04
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 42 4e-04
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 41 7e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 41 9e-04
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 41 9e-04
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 40 0.001
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 40 0.001
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 40 0.001
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 40 0.002
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 40 0.002
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 40 0.002
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 40 0.002
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 39 0.003
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 39 0.004
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 39 0.004
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 38 0.005
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 38 0.005
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 38 0.005
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 38 0.005
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 38 0.005
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 38 0.005
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 38 0.005
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 38 0.006
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 38 0.006
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 38 0.006
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 38 0.006
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 38 0.006
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 38 0.006
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 38 0.006
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 38 0.006
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 38 0.008
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 38 0.008
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 38 0.008
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 38 0.008
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 38 0.008
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 38 0.008
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 37 0.011
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 37 0.011
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 37 0.011
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 37 0.014
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 37 0.014
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 37 0.014
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 37 0.014
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 37 0.014
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 37 0.014
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 37 0.014
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 37 0.014
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 36 0.019
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 36 0.019
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 36 0.019
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 36 0.019
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 36 0.019
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 36 0.019
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 36 0.019
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 36 0.019
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 36 0.025
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 36 0.025
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 36 0.025
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 36 0.025
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 36 0.025
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 36 0.025
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 36 0.025
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 36 0.025
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 36 0.025
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 36 0.025
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 36 0.033
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 36 0.033
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 36 0.033
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 36 0.033
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.033
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.033
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.033
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 35 0.043
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 35 0.043
At2g47310.1 68415.m05906 flowering time control protein-related ... 35 0.043
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 35 0.057
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 35 0.057
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 35 0.057
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 35 0.057
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 35 0.057
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 35 0.057
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 34 0.076
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 34 0.076
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 34 0.076
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 34 0.10
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 34 0.10
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 34 0.10
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 34 0.10
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 34 0.10
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 33 0.13
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 33 0.13
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 33 0.13
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 33 0.13
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 33 0.13
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 33 0.13
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 33 0.17
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 33 0.17
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 33 0.23
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 33 0.23
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 32 0.31
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 32 0.31
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 32 0.31
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 32 0.31
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 32 0.31
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 32 0.40
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 32 0.40
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 32 0.40
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 32 0.40
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 31 0.53
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 31 0.71
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 31 0.71
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 31 0.71
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 31 0.71
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 31 0.93
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 31 0.93
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 30 1.2
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 30 1.2
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 30 1.2
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 30 1.2
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 30 1.2
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 30 1.2
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 30 1.6
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 30 1.6
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 30 1.6
At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ... 30 1.6
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 30 1.6
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 29 2.2
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 29 2.8
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 29 2.8
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 29 2.8
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 29 2.8
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 29 3.8
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 29 3.8
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 29 3.8
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 29 3.8
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 29 3.8
At5g16390.2 68418.m01916 biotin carboxyl carrier protein 1 (BCCP... 28 5.0
At5g16390.1 68418.m01915 biotin carboxyl carrier protein 1 (BCCP... 28 5.0
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 28 6.6
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 28 6.6
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 27 8.7
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/59 (37%), Positives = 37/59 (62%)
Frame = +2
Query: 401 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
TPS + V GLS+ +TE+ + I +++GP+ V+ Q +G SRGF F+ F ++ A+
Sbjct: 295 TPSATVVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAAR 353
Score = 40.7 bits (91), Expect = 9e-04
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +2
Query: 404 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
P+ L V GL E+ + + FSK+ P+ ++ + T SRGF FV+F +EDA
Sbjct: 456 PTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDA 512
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +2
Query: 431 LSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYF---EDMEDA 574
+S YTTE+Q+ +FS+ G + K+ L + T GFCFV F ED EDA
Sbjct: 41 VSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDA 91
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/51 (45%), Positives = 29/51 (56%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V G+S T E + FSKYG V + + + TGRSRGF FV F E+A
Sbjct: 38 VGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEA 88
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/62 (40%), Positives = 34/62 (54%)
Frame = +2
Query: 401 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAKX 580
+PS L + GLS EQ + FS +G V +V+ + +GRSRGF FV F + DA
Sbjct: 38 SPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALS 97
Query: 581 XK 586
K
Sbjct: 98 AK 99
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +2
Query: 410 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
R L V L +E Q+ IF +GPV+ VQ L TG+ +GF F+ F +E +K
Sbjct: 265 RKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSK 320
Score = 31.1 bits (67), Expect = 0.71
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +2
Query: 410 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDM 565
R + + + L TE+ + FSK G V V+ + + + RS+G ++ F D+
Sbjct: 168 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDV 219
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V GLS TE+Q+ F +YG + + Q + + TGR RGF F+ F D A
Sbjct: 16 VGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGA 66
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V GLS TE+Q+ F +YG + + Q + + TGR RGF F+ F D A
Sbjct: 16 VGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGA 66
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
L V LS YTT+Q + +FS +G + + + T R +GF F+ F+ +DA+
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDAR 62
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
L + GLS TTEQ ++ FSK G V + Q + + + RS+GF FV F ++A+
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQ 89
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +2
Query: 410 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
RC V GL+ T EQ I F+++G V + + + TGRS+GF FV F+D ED+
Sbjct: 45 RCF-VGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKD-EDS 97
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
V GLS T++ + FS++G + Q L + TGRSRGF F+ F D
Sbjct: 11 VGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFAD 57
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 40.7 bits (91), Expect = 9e-04
Identities = 22/52 (42%), Positives = 29/52 (55%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
V LS T E + +F +G V +V + Q+TG SRGF FV F EDA+
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQ 268
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 40.7 bits (91), Expect = 9e-04
Identities = 23/64 (35%), Positives = 36/64 (56%)
Frame = +2
Query: 386 LLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDM 565
LL + + S L V G+S +TE+ + FS+YG V KV + + R +GF +V F
Sbjct: 13 LLFSRSFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSK 72
Query: 566 EDAK 577
E+A+
Sbjct: 73 EEAE 76
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/70 (34%), Positives = 39/70 (55%)
Frame = +2
Query: 368 LGDRVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCF 547
+ R RL+ T + C+ GLS YTT+Q + +F+ + + K Q+T R +GF F
Sbjct: 58 ISKRRRLIGGKTLT-CVSNSGLSAYTTDQSLRQLFAPFARLIK-----DQQTQRPKGFGF 111
Query: 548 VYFEDMEDAK 577
+ FE +DA+
Sbjct: 112 ITFESEDDAQ 121
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +2
Query: 380 VRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFE 559
V + R + V+GL TT + + +F YG +++ + + TG+++GF FV F+
Sbjct: 94 VEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFK 153
Query: 560 DMEDAK 577
+ AK
Sbjct: 154 TRKGAK 159
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +2
Query: 380 VRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFE 559
V + R + V+GL TT + + +F YG +++ + + TG+++GF FV F+
Sbjct: 94 VEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFK 153
Query: 560 DMEDAK 577
+ AK
Sbjct: 154 TRKGAK 159
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
L + G++ E + F+KYG V + L + TGRSRGF FV F E A
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAA 94
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/60 (33%), Positives = 34/60 (56%)
Frame = +2
Query: 398 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
P+ L V G S +E ++ +FS++G V V+ +RT +S G+ +V+F EDA+
Sbjct: 54 PSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQ 113
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/60 (33%), Positives = 34/60 (56%)
Frame = +2
Query: 398 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
P+ L V G S +E ++ +FS++G V V+ +RT +S G+ +V+F EDA+
Sbjct: 73 PSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQ 132
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAKXXK 586
L V GLS TT +++ F+ +G + + + +GRS+GF FV + +EDA+ K
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAK 92
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/51 (45%), Positives = 26/51 (50%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V GL T+++ F YGPV V Q T R RGF FV F D EDA
Sbjct: 114 VGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF-DSEDA 163
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
L V G+S T E ++ F+ YG V + + TGR RGF FV F D
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSD 56
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +2
Query: 374 DRVRLL-ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFV 550
+ VRL ++ R L + GL+ TT + + +FS YG +++ L + TG+S+G+ FV
Sbjct: 62 ESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFV 121
Query: 551 YFEDMEDA 574
F ++ A
Sbjct: 122 TFMHVDGA 129
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
++ +NH F YG V++ + TG+SRGF ++ E A+
Sbjct: 181 DRLLNH-FMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQ 222
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +2
Query: 374 DRVRLL-ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFV 550
+ VRL ++ R L + GL+ TT + + +FS YG +++ L + TG+S+G+ FV
Sbjct: 62 ESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFV 121
Query: 551 YFEDMEDA 574
F ++ A
Sbjct: 122 TFMHVDGA 129
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
++ +NH F YG V++ + TG+SRGF ++ E A+
Sbjct: 181 DRLLNH-FMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQ 222
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
L + G+S T E+++ FS YG V + + TGR+RGF F+ F D
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFAD 56
Score = 32.3 bits (70), Expect = 0.31
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V GL TE++ + F ++G + V T R RGF F+ F D +DA
Sbjct: 114 VGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDA 163
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
L + G+S T E+++ FS YG V + + TGR+RGF F+ F D
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFAD 56
Score = 32.3 bits (70), Expect = 0.31
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V GL TE++ + F ++G + V T R RGF F+ F D +DA
Sbjct: 114 VGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDA 163
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
L + G+S T E+++ FS YG V + + TGR+RGF F+ F D
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFAD 56
Score = 32.3 bits (70), Expect = 0.31
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V GL TE++ + F ++G + V T R RGF F+ F D +DA
Sbjct: 114 VGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDA 163
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +2
Query: 389 LENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDME 568
L+N +G Y TE I FS++G V +V+ ++TG+S+ F F+ FED E
Sbjct: 55 LQNKATVLYIGRIPHGFYETE--IEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPE 112
Query: 569 DAK 577
A+
Sbjct: 113 VAE 115
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/67 (35%), Positives = 32/67 (47%)
Frame = +2
Query: 377 RVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYF 556
R R E P L V GLS T++ + F+K G V + RT SRGF FV
Sbjct: 60 RSRGSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTM 119
Query: 557 EDMEDAK 577
++DA+
Sbjct: 120 SSLKDAE 126
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDME 568
V G+ TE ++ F+KYG V + Q T RSRGF FV F+ E
Sbjct: 113 VGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEE 161
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 428 GLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
GL TT N F KYG + + TG+ RGF F+ F D
Sbjct: 25 GLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFAD 69
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDME 568
V G+ TE ++ F+KYG V + Q T RSRGF FV F+ E
Sbjct: 113 VGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEE 161
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 428 GLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
GL TT N F KYG + + TG+ RGF F+ F D
Sbjct: 25 GLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFAD 69
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V ++ TT + +F+KYG V V +RTG SRGF FV ++ ++A
Sbjct: 20 VLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEA 70
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V ++ TT + +F+KYG V V +RTG SRGF FV ++ ++A
Sbjct: 20 VLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEA 70
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
L + G+S T E+++ F KYG + + + TGR+RGF F+ F D
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFAD 65
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
L + G+S T E+++ FS +G V + + TGR+RGF FV F D
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFAD 56
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
L + G+S T E+++ FS +G V + + TGR+RGF FV F D
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFAD 56
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +2
Query: 407 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAKXXK 586
S L V L+ TTE + +F +YG +D++ SRGF F+Y+ +E+A K
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVY------SSRGFAFIYYRHVEEAVAAK 70
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Frame = +2
Query: 410 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED---MEDA 574
RC V GL+ T ++ + F++YG V + + TGRSRGF FV F+D M+DA
Sbjct: 9 RCF-VGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDA 65
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Frame = +2
Query: 410 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED---MEDA 574
RC V GL+ T ++ + F++YG V + + TGRSRGF FV F+D M+DA
Sbjct: 9 RCF-VGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDA 65
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +2
Query: 410 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
RC V GL+ T ++ + FS++G V + + +GRSRGF FV F+D
Sbjct: 7 RCF-VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +2
Query: 410 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
RC V GL+ T ++ + FS++G V + + +GRSRGF FV F+D
Sbjct: 7 RCF-VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +2
Query: 410 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
RC V GL+ T ++ + FS++G V + + +GRSRGF FV F+D
Sbjct: 7 RCF-VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +2
Query: 410 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
RC V GL+ T ++ + FS++G V + + +GRSRGF FV F+D
Sbjct: 7 RCF-VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = +2
Query: 392 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMED 571
E P L V GLS T++ + F+K G V + RT SRGF FV ++D
Sbjct: 66 EVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKD 125
Query: 572 AK 577
A+
Sbjct: 126 AE 127
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/51 (35%), Positives = 32/51 (62%)
Frame = +2
Query: 410 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
RC + GL+ T+++ + F KYG + + + L + +GRSRGF F+ F++
Sbjct: 8 RCF-IGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDE 57
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +2
Query: 404 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
PS L V GLS TT + + F+++G V + + +G S+GF FV + +ED+
Sbjct: 54 PSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDS 110
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 37.1 bits (82), Expect = 0.011
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +2
Query: 371 GDRVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFV 550
GD+ ++ + +R + V GL E ++ + F YG + + Q TGRSRGF FV
Sbjct: 144 GDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFV 203
Query: 551 YFE 559
F+
Sbjct: 204 TFQ 206
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 37.1 bits (82), Expect = 0.011
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = +2
Query: 431 LSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAKXXKX*MPP--- 601
L +TT+ +I + S+YG V +++ + +G+S+G+C V F D A K M
Sbjct: 209 LHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGMNGFIF 268
Query: 602 EWXLTVLASASXYSITQXASHF 667
V+A AS ++ Q ++F
Sbjct: 269 NGKACVVAFASPETLKQMGANF 290
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
L + GLS T + + F+ +G V + + + TGRSRGF FV F D
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFND 85
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
L + GLS T + + F+ +G V + + + TGRSRGF FV F D
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFND 85
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +2
Query: 407 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
SR + V L E+++ +FSKYGPV ++ ++ R G+ FV FED DA
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFSKYGPVVQID---LKIPPRPPGYAFVEFEDARDA 58
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +2
Query: 407 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
SR + V L E+++ +FSKYGPV ++ ++ R G+ FV FED DA
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFSKYGPVVQID---LKIPPRPPGYAFVEFEDARDA 58
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 36.7 bits (81), Expect = 0.014
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
L + G+S T E + FS +G V +V + TGR RGF FV F D
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSD 56
Score = 34.7 bits (76), Expect = 0.057
Identities = 21/51 (41%), Positives = 24/51 (47%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V GL T + F YGPV + Q T R RGF FV F D ED+
Sbjct: 114 VGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSF-DSEDS 163
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +2
Query: 392 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMED 571
+ + R + V GL TT + + F YG + + + + TGR++GF FV F+ +
Sbjct: 157 DRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKG 216
Query: 572 AK 577
A+
Sbjct: 217 AR 218
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/57 (38%), Positives = 28/57 (49%)
Frame = +2
Query: 404 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
P L V GLS TE+ + F+K G V V L T SRGF F+ + + DA
Sbjct: 43 PGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDA 99
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/57 (38%), Positives = 28/57 (49%)
Frame = +2
Query: 404 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
P L V GLS TE+ + F+K G V V L T SRGF F+ + + DA
Sbjct: 73 PGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDA 129
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 36.3 bits (80), Expect = 0.019
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
V G+ TE + +FS+YG + V + TG+S+GF F+ +ED
Sbjct: 40 VGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYED 86
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
L V GLS T + + F+ +G V + + TGRSRGF FV F + A
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSA 89
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
L V GLS T + + F+ +G V + + TGRSRGF FV F + A
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSA 89
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 36.3 bits (80), Expect = 0.019
Identities = 17/59 (28%), Positives = 34/59 (57%)
Frame = +2
Query: 398 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
P ++ L + GLS YT+E+ + F +G + +V+ + + + RS+G+ F+ + E A
Sbjct: 278 PVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAA 336
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +2
Query: 431 LSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAKXXKX*MPPEW 607
LS T+ + FS + + Q+TGRSRGF FV F + +DA+ M +W
Sbjct: 151 LSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKW 209
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +2
Query: 404 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFE 559
P L V LS +TTE + + SKYG + ++ TG SRG+ FV +E
Sbjct: 62 PYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYE 113
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +2
Query: 407 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
+R L V L + +E + +F +G V+ VQ TG +GF FV F +EDA+
Sbjct: 284 ARRLYVGNLHINMSEDDLRKVFESFGSVELVQVP-RDETGLCKGFGFVQFARLEDAR 339
Score = 31.1 bits (67), Expect = 0.71
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 410 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
R + + ++L TE+ + FS+ G V V+ + + + RSRG +V F D
Sbjct: 182 RTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYD 232
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
V GL Y TE QI + +GP+ + TG S+G+ F ++D
Sbjct: 379 VGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQD 425
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 452 QQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
Q++ FSK+G +++ L + TGR +GFC ++ E AK
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAK 300
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 368 LGDRVRLLENPTP-SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFC 544
+ +R+R + + P R + V GL T + + F +YG ++ + + +G+S+G+
Sbjct: 125 VANRIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYG 184
Query: 545 FVYFEDMEDAK 577
F+ ++ A+
Sbjct: 185 FILYKSRSGAR 195
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 452 QQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
Q++ FSK+G +++ L + TGR +GFC ++ E AK
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAK 300
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 368 LGDRVRLLENPTP-SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFC 544
+ +R+R + + P R + V GL T + + F +YG ++ + + +G+S+G+
Sbjct: 125 VANRIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYG 184
Query: 545 FVYFEDMEDAK 577
F+ ++ A+
Sbjct: 185 FILYKSRSGAR 195
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 452 QQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
Q++ FSK+G +++ L + TGR +GFC ++ E AK
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAK 300
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 368 LGDRVRLLENPTP-SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFC 544
+ +R+R + + P R + V GL T + + F +YG ++ + + +G+S+G+
Sbjct: 125 VANRIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYG 184
Query: 545 FVYFEDMEDAK 577
F+ ++ A+
Sbjct: 185 FILYKSRSGAR 195
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = +2
Query: 392 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMED 571
+N R L VF L + I+ +F + G V+ V+ + Q+ G++RGF FV E+
Sbjct: 89 QNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEI-IRQKDGKNRGFAFVTMASGEE 147
Query: 572 AK 577
A+
Sbjct: 148 AQ 149
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
V GL T E+ + IFSK+G V + + TG+SR F FV FE+
Sbjct: 11 VRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEE 57
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 35.9 bits (79), Expect = 0.025
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +2
Query: 410 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
R + V G TT++ + F YG +++ + + TGR +G+ FV F+ + A+
Sbjct: 408 RNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAR 463
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
V GL+ T + + F +YG + + + TGRS+G+ FV F D E A+
Sbjct: 28 VGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAAR 79
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 410 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
RC+ V + TE+Q+ I + GPV + + TG+ +G+ F ++D E A
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETA 63
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +2
Query: 431 LSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAKXXKX*MPPEW 607
LS T+ + FS + + Q+TGRSRGF FV F + +DA+ M +W
Sbjct: 155 LSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKW 213
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
V GL+ T + + F +YG + + + TGRS+G+ FV F D E A+
Sbjct: 28 VGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 35.5 bits (78), Expect = 0.033
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +2
Query: 398 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
P +R L V L T +++ IF KYG + +++ + T +G FV +ED+ DAK
Sbjct: 15 PEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKAT---KGTAFVVYEDIYDAK 71
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2
Query: 446 TEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
T +Q+ + ++G V+KVQ + +GRSR F F + +EDA
Sbjct: 88 TNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDA 130
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 35.5 bits (78), Expect = 0.033
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 404 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
P L V GLS TTE + F ++G + + + + R +GF F+ +E E+A
Sbjct: 75 PKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEA 131
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 35.5 bits (78), Expect = 0.033
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +2
Query: 431 LSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
LS T+ + FS Y + Q+TGRSRGF FV F + +DA+
Sbjct: 146 LSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 194
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 35.5 bits (78), Expect = 0.033
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +2
Query: 407 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
SR + V L E+++ +FSKYGPV ++ ++ R G+ FV F+D DA+
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQID---LKVPPRPPGYAFVEFDDARDAE 59
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 35.5 bits (78), Expect = 0.033
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +2
Query: 407 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
SR + V L E+++ +FSKYGPV ++ ++ R G+ FV F+D DA+
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQID---LKVPPRPPGYAFVEFDDARDAE 59
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 35.5 bits (78), Expect = 0.033
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +2
Query: 407 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
SR + V L E+++ +FSKYGPV ++ ++ R G+ FV F+D DA+
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQID---LKVPPRPPGYAFVEFDDARDAE 59
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
L + G+S T+E ++ F +G V + + TGR+RGF FV F D
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFAD 56
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
L + G+S T+E ++ F +G V + + TGR+RGF FV F D
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFAD 56
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 35.1 bits (77), Expect = 0.043
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMED 571
L V +S TE I +F KYG V ++ + TG +CF+ ++ +E+
Sbjct: 112 LYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEE 163
Score = 32.3 bits (70), Expect = 0.31
Identities = 22/65 (33%), Positives = 34/65 (52%)
Frame = +2
Query: 380 VRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFE 559
V+L +NP L V L+ TT+ ++N +FS+YG ++ + L RG+ FV F
Sbjct: 201 VQLPDNPK----LYVRCLNKQTTKMEVNEVFSRYGIIEDIYMAL-DDMKICRGYAFVQFS 255
Query: 560 DMEDA 574
E A
Sbjct: 256 CKEMA 260
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 34.7 bits (76), Expect = 0.057
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
V LS T + +F +G V + + Q+T SRGF FV F EDA+
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQ 229
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 34.7 bits (76), Expect = 0.057
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +2
Query: 410 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
R L V G+ + SK+G ++ + TGRSRGF +V F EDAK
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAK 58
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 34.7 bits (76), Expect = 0.057
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 395 NPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
N T + V L+ TT+ + + F +YG + + G+S+GF FV FE+ +DA
Sbjct: 24 NKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSA-VVMKDGEGKSKGFGFVNFENADDA 82
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 34.7 bits (76), Expect = 0.057
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2
Query: 446 TEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
TE++I F ++G V +V +RTG+ +G CFV + +DA
Sbjct: 132 TEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 174
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 34.7 bits (76), Expect = 0.057
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2
Query: 446 TEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
TE++I F ++G V +V +RTG+ +G CFV + +DA
Sbjct: 132 TEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 174
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 34.7 bits (76), Expect = 0.057
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +2
Query: 446 TEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
T+ ++ +FS+YG V V + GRSRGF FV F + E+AK
Sbjct: 214 TDDCLHTLFSQYGTVSSV-VVMRDGMGRSRGFGFVNFCNPENAK 256
Score = 34.7 bits (76), Expect = 0.057
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAKXXK 586
L V LS E ++ IF YG + + + GRS+GF FV F + E++K K
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKV-MCHENGRSKGFGFVCFSNCEESKQAK 361
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 34.3 bits (75), Expect = 0.076
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAKXXKX*M 595
L V L +TT+ ++ KYG V +V+ + +G+S+G+C V F D A K +
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDAL 295
Query: 596 ---PPEWXLTVLASASXYSI 646
P V+ AS YS+
Sbjct: 296 NGYPFNGRPCVVEYASPYSV 315
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 34.3 bits (75), Expect = 0.076
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 404 PSRC-LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
PS+ L V L T I+ +FS +G V +V + T +SRG FV + EDA
Sbjct: 54 PSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDA 111
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 34.3 bits (75), Expect = 0.076
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYF 556
L V G++ T+E+ + FS+YG V + + TG+ RGF FV F
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRF 54
Score = 33.1 bits (72), Expect = 0.17
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +2
Query: 395 NPTPSRCLGVF--GLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDME 568
N SR +F GLS TTE++ F ++G V T R RGF FV + D E
Sbjct: 113 NGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTY-DSE 171
Query: 569 DA 574
D+
Sbjct: 172 DS 173
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +2
Query: 455 QINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMED 571
++ +FS++G V + + + TGRSRGF FV D+++
Sbjct: 259 RLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE 297
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 395 NPTPSRCLGVF--GLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDME 568
N T ++ +F GL+ T + F ++G + + + TGRS+G+ FV F++ E
Sbjct: 15 NTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAE 74
Query: 569 DA 574
A
Sbjct: 75 AA 76
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V LS TT+ ++ F +YG + + G+SR F FV FE+ EDA
Sbjct: 229 VKNLSEATTDDELKTTFGQYGSISSA-VVMRDGDGKSRCFGFVNFENPEDA 278
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 33.9 bits (74), Expect = 0.10
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 389 LENPTPSRCLGVFGLSLYTTEQQINHIFS-KYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
LEN P + V LS ++ ++ FS KY V + L TGRS+G+ FV F D
Sbjct: 190 LENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGD 248
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 33.9 bits (74), Expect = 0.10
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 389 LENPTPSRCLGVFGLSLYTTEQQINHIFS-KYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
LEN P + V LS ++ ++ FS KY V + L TGRS+G+ FV F D
Sbjct: 190 LENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGD 248
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
L + GLS T E + FS + V + + + TGRSRG+ FV F + A
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSA 85
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +2
Query: 377 RVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYF 556
+ L P S+ + V L T+E + FS +G + +V+ + RS+G+ F+ F
Sbjct: 30 KASLFNYPLASKIM-VRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQF 88
Query: 557 EDMEDA 574
+DA
Sbjct: 89 TSQDDA 94
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 443 TTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
T + + +F KYG VD+V G+ FVYFED DA+
Sbjct: 13 TRQSDLERLFDKYGRVDRVDM--------KSGYAFVYFEDERDAE 49
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +2
Query: 410 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
R + V +S Q++ FS++G +++ L + TGR +GF + +E AK
Sbjct: 227 RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAK 282
Score = 31.9 bits (69), Expect = 0.40
Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 368 LGDRVRLL-ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFC 544
+ +R+R++ + R + V GL T + F +YG ++ + + + +G+S+G+
Sbjct: 113 VANRIRIVADEDLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYG 172
Query: 545 FVYFEDMEDAK 577
F+ F+ A+
Sbjct: 173 FILFKSRSGAR 183
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 392 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMED 571
++P + + V GL T Q+ FS+ GPV + + + RGF FV F ED
Sbjct: 14 KSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQED 73
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +2
Query: 401 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
TPS+ V GLS T + + F +G + L + +G SRGF FV ++ +E A
Sbjct: 34 TPSKIF-VGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVA 90
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 515 QRTGRSRGFCFVYFEDMEDAKXXKX*MPPEW 607
Q+TGRSRGF FV F + +DA+ M +W
Sbjct: 187 QKTGRSRGFGFVSFRNQQDAQTAINEMNGKW 217
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V LS +++++N +F ++G V + G+S+GF FV FE+ +DA
Sbjct: 228 VKNLSESLSDEELNKVFGEFG-VTTSCVIMRDGEGKSKGFGFVNFENSDDA 277
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +2
Query: 401 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFV 550
+P L V LS Q+ +F G V+ V+ + TGRSRGF FV
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +2
Query: 401 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFV 550
+P L V LS Q+ +F G V+ V+ + TGRSRGF FV
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 32.3 bits (70), Expect = 0.31
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 377 RVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYF 556
R + N ++ + V G+ + + F ++G + + Q TGRSRGF FV +
Sbjct: 119 RGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTY 178
Query: 557 --EDMED 571
EDM D
Sbjct: 179 ESEDMVD 185
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
V GL+ TT + F KYG + ++TG+ RGF FV + D
Sbjct: 46 VGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYAD 92
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 452 QQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
+++ F ++GPV V +G+ RGF FV F D DA
Sbjct: 61 EELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDA 101
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAKXXK 586
++ + F ++GPV + TG RGF FV F D DA K
Sbjct: 49 QEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAK 94
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 32.3 bits (70), Expect = 0.31
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 389 LENPTPSRCLGVFGLSLYTTEQQINHIFS-KYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
LEN P + V L+ ++ ++ FS KY V + L TGRS+G+ FV F D
Sbjct: 192 LENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGD 250
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V GL+ T ++ F ++G + + + TG+S+G+ FV F D + A
Sbjct: 21 VGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSA 71
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYF 556
L V L TE+++ FS +G + +V L + T RSRG ++ +
Sbjct: 263 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILY 309
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 31.9 bits (69), Expect = 0.40
Identities = 22/63 (34%), Positives = 30/63 (47%)
Frame = +2
Query: 389 LENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDME 568
L + TP+R L + + TE + YG V VQ M+R S G V+F D+
Sbjct: 99 LPSNTPTRSLSLISVPRDVTESTVRRDLEVYGDVRGVQ---MERI--SEGIVTVHFYDIR 153
Query: 569 DAK 577
DAK
Sbjct: 154 DAK 156
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAKXXK 586
++ + F ++GPV + TG RGF F+ F D DA K
Sbjct: 50 QEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAK 95
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 404 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
P L V L+ T ++ ++ IFS++G V +TG S + F+ FE+ E +
Sbjct: 241 PDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCE 298
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
V LS TT+ + FS YG V + T RSRGF FV + +A+
Sbjct: 7 VGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAE 58
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 31.1 bits (67), Expect = 0.71
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 404 PSRCLGVFGLSLYTTEQQINHIFSK-YGPVDKVQXXLMQRTGRSRGFCFVYFED 562
P + V L+ T+ ++ F YG V + L + TGRS+G+ FV F D
Sbjct: 152 PDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFAD 205
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 31.1 bits (67), Expect = 0.71
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +2
Query: 392 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMED 571
E+ PS L + L L + F ++GP+ + TG RGF FV + ED
Sbjct: 42 ESSGPSGLL-IRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAED 100
Query: 572 A 574
A
Sbjct: 101 A 101
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V GL+ T ++ F ++G + + + TG+S+G+ FV F + + A
Sbjct: 21 VGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSA 71
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V GL+ T ++ F ++G + + + TG+S+G+ FV F + + A
Sbjct: 21 VGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSA 71
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
V GL+ T + + + F ++G + + + +GRS+G+ FV F D E A+
Sbjct: 11 VGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
V GL+ T + + + F ++G + + + +GRS+G+ FV F D E A+
Sbjct: 11 VGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
E + +F KYG V++V GF FVY ED DA+
Sbjct: 15 ESDLERLFRKYGKVERVDM--------KAGFAFVYMEDERDAE 49
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
E + +F KYG V++V GF FVY ED DA+
Sbjct: 15 ESDLERLFRKYGKVERVDM--------KAGFAFVYMEDERDAE 49
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 416 LGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
L V L Q+ +F G V+ V+ + TGRSRGF FV + + +
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVE 146
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
V LS + + +FS+ G V + + + +GRS+GF FV ++ ++ +
Sbjct: 208 VGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
V GL+ T ++ + F ++G + + + +GRS+G+ FV F + E A+
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
V GL+ T ++ + F ++G + + + +GRS+G+ FV F + E A+
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
V GL+ T ++ + F ++G + + + +GRS+G+ FV F + E A+
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 383 RLLENPTPSRCLGVFGLSLYTTEQQINHIFS-KYGPVDKVQXXLMQRTGRSRGFCFVYFE 559
R +EN P + V LS T+ ++ FS +Y V + + TGRS+G+ FV F
Sbjct: 194 RAVENG-PDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFG 252
Query: 560 D 562
D
Sbjct: 253 D 253
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 443 TTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
T + +FSK+G V +V G+ FVYFED DA+
Sbjct: 13 TRHSDLERLFSKFGRVKRVDM--------KSGYAFVYFEDERDAE 49
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V +++ TE+++ FS+ G + + + G+S+GF FV F E+A
Sbjct: 308 VKNVNVAVTEEELRKHFSQCGTITSTKL-MCDEKGKSKGFGFVCFSTPEEA 357
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 446 TEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
T + +F K+G + + ++ G+SRG+ FV FE EDA
Sbjct: 124 TNAVLQDMFKKFGNIVSCKVATLE-DGKSRGYGFVQFE-QEDA 164
>At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q10572 Sex determination
protein fox-1 (Feminizing locus on X protein 1)
{Caenorhabditis elegans}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +2
Query: 398 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
P +R L + L T + +F +Y + +V+ + T +G FV +ED+ DAK
Sbjct: 16 PEVTRLLYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGT---KGTAFVVYEDIYDAK 72
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMED 571
V L +T + + FSK+G + + ++TGR+R F F+ F E+
Sbjct: 216 VGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE 265
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
E + +F KYG V++V GF FVY ED DA+
Sbjct: 15 EGDLERLFRKYGKVERVDM--------KAGFAFVYMEDERDAE 49
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 455 QINHIFSKYGPVDKVQXXLMQRTGRSRGFCFV 550
++ +FS++G V + + TGRSRGF FV
Sbjct: 222 RLERLFSEHGKVVDARVVSDRETGRSRGFGFV 253
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +2
Query: 434 SLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
S + TE+++ +FS+ G + V+ + G+SR F ++ F ++A+
Sbjct: 11 SKHVTEERLRDVFSRKGEIADVKLK-RKSDGKSRQFAYIGFRTEQEAQ 57
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 440 YTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
+ +E Q+ +F ++ VD+V + T SRG CF+ E+A
Sbjct: 28 HMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEA 72
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 446 TEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
+E ++ +FSKYG + +Q L S+G F+ +E E A
Sbjct: 118 SEAEVQSLFSKYGTIKDLQ-ILRGAQQTSKGCAFLKYETKEQA 159
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 440 YTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
+ +E Q+ +F ++ VD+V + T SRG CF+ E+A
Sbjct: 28 HMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEA 72
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 446 TEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
+E ++ +FSKYG + +Q L S+G F+ +E E A
Sbjct: 118 SEAEVQSLFSKYGTIKDLQ-ILRGAQQTSKGCAFLKYETKEQA 159
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 398 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
P L + L +E+ + +FS +G V + G SRGF F+ FE + A
Sbjct: 13 PRKFTSLYIANLDAQVSEEMLFLMFSDFGKVIR-SVLAKDFRGESRGFAFIEFESADSA 70
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDA 574
V GL+ T ++ + F KYG + + + T RS+G+ FV F+D + A
Sbjct: 21 VGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAA 71
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 446 TEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
T Q + F V + + TGRSRGF F+ FE E+ +
Sbjct: 231 TSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQ 274
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 449 EQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFV 550
++++ FSK G V +V + TG SRGF ++
Sbjct: 496 KKELRSHFSKCGEVTRVHVPTDRETGASRGFAYI 529
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 470 FSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
FS +G + + M TGRS+G+ FV FE E A+
Sbjct: 156 FSSFGTILSCKVA-MDVTGRSKGYGFVQFEKEESAQ 190
>At5g16390.2 68418.m01916 biotin carboxyl carrier protein 1 (BCCP1)
identical to biotin carboxyl carrier protein of
acetyl-CoA carboxylase precursor [Arabidopsis thaliana]
gi|9759121|dbj|BAB09606
Length = 254
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 623 ASASXYSITQXASHFPL 673
A+AS Y++TQ +SHFP+
Sbjct: 13 AAASVYAVTQTSSHFPI 29
>At5g16390.1 68418.m01915 biotin carboxyl carrier protein 1 (BCCP1)
identical to biotin carboxyl carrier protein of
acetyl-CoA carboxylase precursor [Arabidopsis thaliana]
gi|9759121|dbj|BAB09606
Length = 280
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 623 ASASXYSITQXASHFPL 673
A+AS Y++TQ +SHFP+
Sbjct: 13 AAASVYAVTQTSSHFPI 29
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +2
Query: 458 INHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFEDMEDAK 577
+ +F ++GP+ K + ++ + + FV FE+ + AK
Sbjct: 566 VESVFKQFGPIKKGRIRVINPANSNYWYAFVEFEEADAAK 605
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 422 VFGLSLYTTEQQINHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
V L+ TT + F ++G V GRS+G+ F+ F D
Sbjct: 16 VGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRD 62
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 386 LLENPTPSRCLGVFGLSLYTTEQQ-INHIFSKYGPVDKVQXXLMQRTGRSRGFCFVYFED 562
+L+ P FG Y + + I + + V+ + TG+SRGF FV +
Sbjct: 76 VLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSN 135
Query: 563 MED 571
+ED
Sbjct: 136 VED 138
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,949,245
Number of Sequences: 28952
Number of extensions: 202276
Number of successful extensions: 634
Number of sequences better than 10.0: 149
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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