Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060968.seq
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.4  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    22   5.4  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    22   5.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.4  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 619  PDFS*KPNGWW 587
            PD++ KP+ WW
Sbjct: 1033 PDWTTKPSTWW 1043


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 373 TLSVMYLFNLHYL 335
           TL V+Y FNL YL
Sbjct: 312 TLVVIYTFNLFYL 324


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 373 TLSVMYLFNLHYL 335
           TL V+Y FNL YL
Sbjct: 268 TLVVIYTFNLFYL 280


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 454 FRVKLLGEDNLFEWEVAISDRRIHFIKVD 540
           FR K L +DN+ +     S    H+++ D
Sbjct: 808 FRGKALMDDNVMKKYTTSSSEARHYVQYD 836


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 454 FRVKLLGEDNLFEWEVAISDRRIHFIKVD 540
           FR K L +DN+ +     S    H+++ D
Sbjct: 808 FRGKALMDDNVMKKYTTSSSEARHYVQYD 836


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 454 FRVKLLGEDNLFEWEVAISDRRIHFIKVD 540
           FR K L +DN+ +     S    H+++ D
Sbjct: 808 FRGKALMDDNVMKKYTTSSSEARHYVQYD 836


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 454 FRVKLLGEDNLFEWEVAISDRRIHFIKVD 540
           FR K L +DN+ +     S    H+++ D
Sbjct: 808 FRGKALMDDNVMKKYTTSSSEARHYVQYD 836


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,106
Number of Sequences: 336
Number of extensions: 3812
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)